CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.150645.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.150645.1.S1_at AJ778728 hypothetical protein - 2e-15 At1g75420 glycosyl transferase family 1 protein S.X. H.G.
0.77 94.9 PtpAffx.149909.1.S1_s_at AJ773011 hypothetical protein - 3e-141 At2g13560 malate oxidoreductase, putative S.X. H.G.
0.67 91.1 Ptp.3086.1.S1_s_at BU832807 hypothetical protein - 4e-47 At2g13560 malate oxidoreductase, putative S.X. H.G.
0.38 63.7 PtpAffx.84497.1.S1_s_at CF231611 hypothetical protein - 9e-17 At3g18140 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.33 57.5 Ptp.4771.1.S1_at BU893475 hypothetical protein - 1e-10 At4g19670 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.27 47.1 PtpAffx.83555.1.S1_s_at BI068935 hypothetical protein - 3e-4 At1g14850 NUP155 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.3 93.7 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-7 56 PtpAffx.12089.2.A1_a_at CK091083 hypothetical protein - 1e-47 At1g19710 glycosyl transferase family 1 protein C.G. S.X.
0.02 4e-1 36 PtpAffx.205926.1.S1_at pmrna11758 hypothetical protein - 4e-8 At1g67800 copine-related C.G. S.X.
0.02 4e-1 36 PtpAffx.147323.1.A1_at CV257845 hypothetical protein - 2e+0 At3g22530 unknown protein C.G. S.X.
0.02 4e-1 36 Ptp.5598.1.S1_s_at DN484758 hypothetical protein - 2e+0 At5g23535 KOW domain-containing protein C.G. S.X.
0.02 4e-1 36 Ptp.3455.1.A1_at DN492911 hypothetical protein - 4e-18 At1g35220 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.40937.1.S1_at DN486183 hypothetical protein - 6e-1 At3g09150 HY2 (ELONGATED HYPOCOTYL 2) C.G. S.X.
0.03 2e+0 34 PtpAffx.210154.1.S1_at pmrna20010 - - 2e-5 At2g44510 p21Cip1-binding protein-related C.G. S.X.
0.01 2e+0 34 PtpAffx.209723.1.S1_at pmrna19192 hypothetical protein - 2e-1 At1g51970 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.12309.2.S1_at CV232922 hypothetical protein - 1e-1 At1g16840 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 2e-15 83 Arabidopsis thaliana At1g75420 843878 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAMPF - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.92684.1.S1_at CF808409 - - 4e+0 At4g00420 double-stranded RNA-binding domain (DsRBD)-containing protein C.G. S.X.
0.10 2e-10 65 Hordeum vulgare Contig9017_at Contig9017 - - 2e-7 At1g19710 glycosyl transferase family 1 protein C.G. S.X.
0.04 6e-1 36 Oryza sativa OsAffx.23107.1.S1_at - - - 0 C.G. S.X.
0.14 6e-12 71 Triticum aestivum TaAffx.120728.1.S1_at CA645229 - - 2e-6 At1g75420 glycosyl transferase family 1 protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1621596_at CB974144 hypothetical protein LOC100260248 - 1e-3 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 9e-6 50 Zea mays Zm.2763.1.S1_at AW067129 hypothetical protein LOC100191545 - 9e-7 At1g19710 glycosyl transferase family 1 protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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