CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.149893.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.149893.1.S1_s_at DN486606 hypothetical protein - 1e-8 At3g12950 catalytic S.X. H.G.
0.73 93.6 Ptp.7446.1.S1_at BU814736 hypothetical protein - 2e+0 At3g21710 unknown protein S.X. H.G.
0.67 91.1 Ptp.3640.1.S1_at BU895250 hypothetical protein - 7e-2 At4g09890 unknown protein S.X. H.G.
0.61 87.0 PtpAffx.15088.1.S1_at CF936886 hypothetical protein - 7e-3 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) S.X. H.G.
0.43 69.7 PtpAffx.249.217.S1_at CK096335 - - 2e-7 At2g31410 unknown protein S.X. H.G.
0.34 58.3 Ptp.886.1.S1_at BU831513 hypothetical protein - 1e-26 At5g55530 C2 domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.0 98.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.5 98.8 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.9 98.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.0 97.5 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 0 1594 PtpAffx.210085.1.S1_at pmrna19867 hypothetical protein - 6e-27 At3g12950 catalytic C.G. S.X.
0.18 7e-23 109 PtpAffx.36421.1.S1_at CK090865 hypothetical protein - 1e-102 At5g45030 catalytic C.G. S.X.
0.02 8e-1 36 PtpAffx.96746.1.S1_at CV252292 hypothetical protein - 4e-8 At2g28110 FRA8 (FRAGILE FIBER 8) C.G. S.X.
0.02 8e-1 36 PtpAffx.224276.1.S1_x_at pmrna42681 hypothetical protein - 1e-2 At1g66390 MYB90 (MYB DOMAIN PROTEIN 90) C.G. S.X.
0.02 8e-1 36 PtpAffx.224276.1.S1_at pmrna42681 hypothetical protein - 1e-2 At1g66390 MYB90 (MYB DOMAIN PROTEIN 90) C.G. S.X.
0.02 8e-1 36 PtpAffx.224277.1.S1_x_at pmrna42682 hypothetical protein - 2e-4 At1g66390 MYB90 (MYB DOMAIN PROTEIN 90) C.G. S.X.
0.01 8e-1 36 PtpAffx.208997.1.S1_s_at pmrna17830 hypothetical protein - 5e-138 At1g26190 phosphoribulokinase/uridine kinase family protein C.G. S.X.
0.01 8e-1 36 PtpAffx.203735.1.S1_at pmrna7381 hypothetical protein - 9e-15 At1g61690 phosphoinositide binding C.G. S.X.
0.02 8e-1 36 PtpAffx.202578.1.S1_x_at pmrna5166 hypothetical protein - 2e-4 At1g66390 MYB90 (MYB DOMAIN PROTEIN 90) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-8 61 Arabidopsis thaliana At3g12950 820480 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBOF - - - C.G. S.X.
0.41 9e-50 198 Glycine max GmaAffx.85539.2.S1_at BQ630291 - - 1e-10 At3g12950 catalytic C.G. S.X.
0.11 2e-2 40 Hordeum vulgare Contig15015_at Contig15015 - - 2e-10 At2g35155 catalytic C.G. S.X.
0.15 3e-16 87 Oryza sativa Os04g0615000 AK064014.1 - Hypothetical protein 2e-12 At5g45030 catalytic C.G. S.X.
0.09 1e-1 38 Triticum aestivum Ta.10108.3.S1_a_at BJ307443 - - 2e-8 At2g35155 catalytic C.G. S.X.
0.10 2e-10 65 Vitis vinifera 1610818_at BQ793110 hypothetical protein LOC100250825 - 1e-14 At2g35155 catalytic C.G. S.X.
0.14 7e-11 67 Zea mays Zm.5157.1.A1_at CF638048 - - 5e-14 At5g45030 catalytic C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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