Gene omics information

Query gene ID	PtpAffx.148941.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	74.6	PtpAffx.148941.1.S1_at	AJ779465	hypothetical protein	-	3e-8	At5g32440	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.224256.1.S1_s_at	pmrna42648	hypothetical protein	-	4e-53	At4g01810	protein transport protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.200730.1.S1_s_at	pmrna1405	hypothetical protein	-	6e+0	At3g04590	DNA-binding family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.224986.1.S1_at	pmrna43947	hypothetical protein	-	2e-90	At1g17980	nucleotidyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.217252.1.S1_at	pmrna32439	hypothetical protein	-	3e-53	At5g58100	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.1257.4.S1_a_at	CX180448	hypothetical protein	-	2e-30	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.138169.1.S1_at	BI129010	hypothetical protein	-	2e-26	At1g04140	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.119547.1.S1_s_at	BP928546	hypothetical protein	-	1e-89	At2g42500	PP2A-4	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	92.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-158	559	Ptp.229.1.A1_at	CV236477	hypothetical protein	-	3e-8	At5g32440	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	2e-158	559	Ptp.229.1.A1_s_at	CV236477	-	-	3e-8	At5g32440	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	2e-145	515	PtpAffx.4440.1.S1_at	CV238113	-	-	8e-7	At5g32440	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	38	PtpAffx.20264.1.S1_at	CK103709	-	-	2e+0	At1g51160	synbindin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.203272.1.S1_at	pmrna6484	hypothetical protein	-	1e-1	At2g41310	ATRR3 (RESPONSE REGULATOR 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.222426.1.S1_at	pmrna39821	hypothetical protein	-	1e+0	At4g22513	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.210238.1.S1_at	pmrna20159	hypothetical protein	-	2e-4	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.208079.1.S1_at	pmrna16046	hypothetical protein	-	3e-31	At1g68070	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.204935.1.S1_at	pmrna9771	hypothetical protein	-	7e-1	At5g59270	lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-8	59	Arabidopsis thaliana	At5g32440	833203	-	F:unknown;P:unknown;C:chloroplast;OPMFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	GmaAffx.63256.1.S1_at	AI900416	-	-	3e+0	At2g01630	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.04	2e-1	36	Hordeum vulgare	Contig11659_at	Contig11659	-	-	5e-2	At5g32440	-	C.G.	S.X.	Please select
0.03	3e-3	44	Oryza sativa	Os02g0184500	AK105238.1	-	-	7e-4	At5g32440	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	TaAffx.109260.1.S1_at	CA677861	-	-	1e+0	At1g64890	integral membrane transporter family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1617619_at	CB838033	-	-	1e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9851.1.A1_at	BM380606	-	-	4e-1	At4g18160	KCO6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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