Gene omics information

Query gene ID	PtpAffx.148676.1.S1_at
Gene name	cytochrome P450 /// cytochrome P450 /// cytochrome P450
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.148676.1.S1_at	CK110328	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	1e-4	At3g26300	CYP71B34	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.39736.2.A1_a_at	CV263341	cytochrome P450	-	1e-3	At3g26280	CYP71B4	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.4024.2.A1_at	CV275984	hypothetical protein	-	2e-75	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.114927.1.A1_at	CV239325	-	-	2e-1	At5g38378	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.6191.1.S1_at	CV235273	hypothetical protein	-	1e-30	At3g10300	calcium-binding EF hand family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.2376.1.S1_at	CV241004	hypothetical protein	-	6e-11	At1g01300	aspartyl protease family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.3	97.7	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-14	81	PtpAffx.18471.1.A1_at	CV245559	cytochrome P450 /// cytochrome P450 /// cytochrome P450	-	7e-3	At1g13090	CYP71B28	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.2301.1.A1_at	CV237242	-	-	2e-21	At3g02360	6-phosphogluconate dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.25979.2.S1_at	CK105918	hypothetical protein	-	4e-18	At5g61330	rRNA processing protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.214187.1.S1_at	pmrna27599	hypothetical protein	-	1e-6	At4g32420	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.204936.1.S1_at	pmrna9772	hypothetical protein	-	7e-7	At3g46690	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	Ptp.6238.1.S1_at	DN500648	-	-	7e+0	At5g60590	yrdC protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e+0	32	PtpAffx.95368.1.A1_s_at	CV249756	hypothetical protein	-	1e+0	At1g80370	CYCA2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.76187.1.A1_at	CV241519	hypothetical protein	-	2e-21	At1g70520	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e+0	32	PtpAffx.65226.1.A1_at	CK089632	-	-	7e-1	At4g36570	ATRL3 (ARABIDOPSIS RAD-LIKE 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-4	48	Arabidopsis thaliana	At3g26300	822234	CYP71B34	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-3	44	Glycine max	GmaAffx.83954.1.S1_at	CA935587	-	-	3e+0	At4g05260	ubiquitin family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	Contig21628_at	Contig21628	-	-	1e+0	At4g25870	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	OsAffx.19347.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	Ta.25348.1.A1_at	CD490675	-	-	2e+0	At3g13700	RNA-binding protein, putative	C.G.	S.X.	Please select
0.11	3e-5	48	Vitis vinifera	1619194_at	CB981838	-	-	4e+0	At4g07820	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9859.1.A1_at	BM349366	-	-	4e+0	At2g43920	thiol methyltransferase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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