Gene omics information

Query gene ID	PtpAffx.147936.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.147936.1.S1_s_at	BP924717	hypothetical protein	-	1e-21	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.9177.1.S1_at	CK105027	-	-	3e-1	At4g08260	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.208122.1.S1_at	pmrna16132	hypothetical protein	-	2e+0	At1g22510	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.4515.1.S1_at	CV253179	hypothetical protein	-	5e-79	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.6668.1.S1_at	CN523821	hypothetical protein	-	4e-38	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.8691.2.S1_a_at	CN522640	hypothetical protein	-	2e-12	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.152513.1.S1_at	AJ774588	hypothetical protein	-	4e-10	At3g54020	phosphatidic acid phosphatase-related / PAP2-related	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	99.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.8	98.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	775	Ptp.6668.1.S1_at	CN523821	hypothetical protein	-	4e-38	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	6e-55	214	Ptp.2967.1.S1_s_at	DN489007	hypothetical protein	-	5e-42	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-1	36	PtpAffx.18595.2.A1_at	CV256159	-	-	2e-21	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.222325.1.S1_x_at	pmrna39654	hypothetical protein	-	6e-26	At5g44180	homeobox transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.222325.1.S1_at	pmrna39654	hypothetical protein	-	6e-26	At5g44180	homeobox transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.205226.1.S1_at	pmrna10360	hypothetical protein	-	9e-3	At5g49520	WRKY48	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	Ptp.5265.1.S1_x_at	CV279994	hypothetical protein	-	6e+0	At3g29200	CM1 (CHORISMATE MUTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	Ptp.5265.1.S1_s_at	CV279994	hypothetical protein	-	6e+0	At3g29200	CM1 (CHORISMATE MUTASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e+0	32	PtpAffx.9792.1.S1_s_at	BP930774	hypothetical protein	-	7e-24	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	1e-21	103	Arabidopsis thaliana	At5g48230	834876	ACAT2 (ACETOACETYL-COA THIOLASE 2)	F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:embryonic development ending in seed dormancy;C:peroxisome, plasma membrane;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.54	3e-51	202	Glycine max	GmaAffx.89899.1.S1_s_at	CF805624	-	-	3e-75	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.14	5e-10	63	Hordeum vulgare	Contig3472_at	Contig3472	-	-	1e-24	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.23	5e-13	75	Oryza sativa	Os09g0252100	AK059654.1	-	Acetyl-CoA C-acetyltransferase	2e-35	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	3e-7	56	Triticum aestivum	Ta.6247.3.S1_x_at	BU100866	-	-	3e-5	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.41	4e-105	379	Vitis vinifera	1619079_s_at	CB008174	hypothetical protein LOC100240809	-	1e-79	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.1061.1.A1_at	AI881945	Hypothetical protein LOC100193941	-	2e-1	At4g22160	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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