CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.147674.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.29 50.5 PtpAffx.147674.1.A1_at CV229116 hypothetical protein - 3e+0 At1g08710 F-box family protein S.X. H.G.
0.46 73.7 PtpAffx.9156.2.S1_at AJ779497 hypothetical protein - 1e-1 At3g23130 SUP (SUPERMAN) S.X. H.G.
0.32 55.2 PtpAffx.223460.1.S1_at pmrna41485 hypothetical protein - 7e-3 At3g27100 - S.X. H.G.
0.30 52.0 PtpAffx.68177.1.A1_s_at CX658713 hypothetical protein - 2e-3 At4g01590 unknown protein S.X. H.G.
0.14 23.5 PtpAffx.21786.1.S1_at CV234229 hypothetical protein - 3e-27 At5g66410 PLP3b (Phosducin-like protein 3 homolog) S.X. H.G.
0.07 11.6 Ptp.4499.1.S1_at CN519933 hypothetical protein - 3e-8 At5g55640 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 97.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2 93.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2 89.3 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 4e-25 115 PtpAffx.29592.1.S1_at CV278968 hypothetical protein - 1e-38 At1g72280 AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1) C.G. S.X.
0.02 3e-1 36 PtpAffx.217633.1.S1_s_at pmrna32979 SET domain protein - 5e-144 At5g14260 SET domain-containing protein C.G. S.X.
0.03 3e-1 36 PtpAffx.212226.1.S1_at pmrna23969 AP2/ERF domain-containing transcription factor - 3e-23 At5g19790 RAP2.11 (related to AP2 11) C.G. S.X.
0.03 3e-1 36 PtpAffx.211067.1.S1_at pmrna21731 AP2/ERF domain-containing transcription factor - 8e-30 At5g19790 RAP2.11 (related to AP2 11) C.G. S.X.
0.04 3e-1 36 PtpAffx.18212.1.A1_at CV257238 hypothetical protein - 2e-2 At2g04940 scramblase-related C.G. S.X.
0.02 1e+0 34 PtpAffx.45846.1.S1_at CK091695 - - 2e+0 Atmg00770 - C.G. S.X.
0.03 1e+0 34 PtpAffx.160490.2.A1_at CK093102 hypothetical protein - 1e+0 At5g07880 SNAP29 C.G. S.X.
0.02 1e+0 34 Ptp.2509.1.S1_at CK093712 hypothetical protein - 3e-8 At1g69420 zinc finger (DHHC type) family protein C.G. S.X.
0.03 4e+0 32 PtpAffx.61233.1.S1_at CV268235 - - 4e-1 At4g24230 ACBP3 (ACYL-COA-BINDING DOMAIN 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At1g08710 837392 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF - - - C.G. S.X.
0.04 1e+0 34 Glycine max Gma.10981.1.S1_at BM092081 - - 1e-2 At5g33390 glycine-rich protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HS06E04u_s_at HS06E04u - - 2e-1 At2g44065 ribosomal protein L2 family protein C.G. S.X.
0.05 6e+0 32 Oryza sativa Os10g0448500 9638.m02682 - - 1e+0 At5g66040 STR16 (SULFURTRANSFERASE PROTEIN 16) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.24736.1.S1_at CA713388 - - 9e-1 At2g23148 - C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1619971_at CB970981 hypothetical protein LOC100240792 - 9e-4 At3g16420 PBP1 (PYK10-BINDING PROTEIN 1) C.G. S.X.
0.05 5e+0 30 Zea mays ZmAffx.1325.1.S1_at 40794996-35 - - 4e-2 At1g49910 WD-40 repeat family protein / mitotic checkpoint protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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