Gene omics information

Query gene ID	PtpAffx.147241.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.147241.1.A1_s_at	CV244318	hypothetical protein	-	2e+0	At5g51650	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	Ptp.2463.1.S1_s_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.2463.1.S1_a_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.213451.1.S1_at	pmrna26301	hypothetical protein	-	7e-1	At4g07786	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.131802.1.S1_at	DN501815	hypothetical protein	-	2e-5	At3g01650	RGLG1 (RING domain Ligase1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.42700.1.A1_at	BP934666	hypothetical protein	-	5e+0	At4g03050	AOP3	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	98.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
9.0	98.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
8.7	98.6	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.5	98.3	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.0	97.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1	96.8	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.7	96.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.5	96.1	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.4	95.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2	95.6	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	1126	PtpAffx.213451.1.S1_at	pmrna26301	hypothetical protein	-	7e-1	At4g07786	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	7e-59	228	PtpAffx.206598.1.S1_at	pmrna13093	hypothetical protein	-	7e+0	At5g47900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	3e-21	103	Ptp.7354.1.S1_at	DN494943	hypothetical protein	-	4e+0	At5g47900	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.54404.1.S1_s_at	DN503465	hypothetical protein	-	1e-1	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.212881.1.S1_at	pmrna25209	hypothetical protein	-	4e-7	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.212881.1.S1_x_at	pmrna25209	hypothetical protein	-	4e-7	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.219708.1.S1_at	pmrna35705	hypothetical protein	-	2e-144	At1g19220	ARF19 (AUXIN RESPONSE FACTOR 19)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.51614.1.S1_at	CV271397	hypothetical protein	-	2e-13	At3g29180	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.225150.1.S1_at	pmrna44283	hypothetical protein	-	9e-9	At1g53430	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g51650	835239	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	GmaAffx.87629.1.S1_at	BG726680	-	-	2e-21	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	HVSMEg0008J13r2_at	HVSMEg0008J13r2	-	-	5e+0	At5g16430	-	C.G.	S.X.	Please select
0.04	9e-4	46	Oryza sativa	Os12g0153900	9640.m00496	-	Hypothetical protein	6e-3	At2g35960	NHL12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	Ta.10472.1.A1_at	BJ246177	-	-	4e+0	At5g18180	Gar1 RNA-binding region family protein	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1614863_at	CF209845	hypothetical protein LOC100251857	-	4e+0	Atcg00710	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.67.1.A1_at	AI665138	hypothetical protein LOC100277004	-	1e+1	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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