Gene omics information

Query gene ID PtpAffx.147231.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5078.6PtpAffx.147231.1.A1_atCV244696--1e+0At3g50860clathrin adaptor complex small chain family proteinS.X.H.G.
0.3661.6PtpAffx.29121.1.S1_atDN497568--2e+1At5g15710F-box family proteinS.X.H.G.
0.3153.7PtpAffx.215540.1.S1_atpmrna29796hypothetical protein-4e+0At4g17310unknown proteinS.X.H.G.
0.2950.5PtpAffx.58826.1.A1_atCK089170--5e-1At2g34620mitochondrial transcription termination factor-related / mTERF-relatedS.X.H.G.
0.2238.3PtpAffx.225085.1.S1_s_atpmrna44181hypothetical protein-4e+0At5g65274-S.X.H.G.
0.1932.7PtpAffx.31269.1.A1_atCV241511--3e+0At5g18362unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.599.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
8.698.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
6.297.6GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.796.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.295.6GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.293.5GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.092.9GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.791.8GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.791.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.691.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.025e-136PtpAffx.209879.1.S1_atpmrna19463hypothetical protein-3e-49At1g29800phosphoinositide binding / zinc ion bindingC.G.S.X.
0.025e-136PtpAffx.205188.1.S1_atpmrna10274hypothetical protein-2e+0At5g65120unknown proteinC.G.S.X.
0.025e-136PtpAffx.152148.1.S1_atCV243166--8e-1At5g22950VPS24.1C.G.S.X.
0.032e+034PtpAffx.7814.3.A1_a_atCA933166hypothetical protein-2e-27At5g47180vesicle-associated membrane family protein / VAMP family proteinC.G.S.X.
0.022e+034PtpAffx.26552.2.A1_atCV227586--2e-9At1g76670transporter-relatedC.G.S.X.
0.022e+034PtpAffx.26552.1.S1_atCK092292hypothetical protein-8e-6At1g21070transporter-relatedC.G.S.X.
0.022e+034PtpAffx.26552.1.S1_a_atCK092292hypothetical protein-8e-6At1g21070transporter-relatedC.G.S.X.
0.012e+034PtpAffx.225845.1.S1_s_atpmrna45468hypothetical protein-4e-26At1g11300ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingC.G.S.X.
0.012e+034PtpAffx.224710.1.S1_s_atpmrna43522hypothetical protein-1e-12At1g11300ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+034Arabidopsis thalianaAt3g50860824250clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOP---C.G.S.X.
0.032e+034Glycine maxGmaAffx.77950.1.S1_atBG046482transcription factor-1e+0At5g60540PDX2 (PYRIDOXINE BIOSYNTHESIS 2)C.G.S.X.
0.023e+032Hordeum vulgareContig7692_s_atContig7692--8e-8At4g16765oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
0.027e-136Oryza sativaOs01g0802000AK103314.1-The start codon is not identified.2e-1At2g40830RHC1AC.G.S.X.
0.032e+034Triticum aestivumTa.8050.1.S1_atBQ161186--5e+0At3g05625bindingC.G.S.X.
0.044e-134Vitis vinifera1608629_atCD797519--4e-1At1g53035unknown proteinC.G.S.X.
0.046e-134Zea maysZmAffx.1308.1.S1_s_at11990232-76--2e+0At5g13780GCN5-related N-acetyltransferase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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