Gene omics information

Query gene ID	PtpAffx.147163.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	87.0	PtpAffx.147163.1.A1_at	CV267314	hypothetical protein	-	4e-1	At4g23260	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.160.1.A1_at	CV271753	-	-	5e-2	At4g35510	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.100032.1.A1_at	BP934526	-	-	3e-1	At3g20960	CYP705A33	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.158291.1.A1_s_at	BP931571	hypothetical protein	-	3e+0	At5g65320	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.209672.1.S1_at	pmrna19089	hypothetical protein	-	9e-30	At1g62400	HT1 (high leaf temperature 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.35533.1.S1_at	CV258042	NAC domain protein, IPR003441	-	2e+0	At5g38100	methyltransferase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.145.1.A1_at	CV269750	hypothetical protein	-	2e-3	At1g33700	catalytic/ glucosylceramidase	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.107969.1.A1_at	CV265199	-	-	3e-2	At5g66680	DGL1	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.127135.1.A1_at	CV270237	rna-dependent RNA polymerase	-	3e+0	At5g28590	DNA-binding protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.219237.1.S1_at	pmrna35094	multidrug resistance protein ABC transporter family	-	2e-12	At1g30410	ATMRP13	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.2	99.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
11.3	99.2	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.2	99.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.5	83.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	2e-74	280	PtpAffx.225226.1.S1_s_at	pmrna44417	hypothetical protein	-	5e-6	At4g21370	S-locus protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-69	264	PtpAffx.225225.1.S1_at	pmrna44416	hypothetical protein	-	3e-4	At4g21366	ATP binding / protein tyrosine kinase	C.G.	S.X.	Please selecteFP Browser (expression)
0.22	2e-50	200	PtpAffx.224770.1.S1_at	pmrna43610	hypothetical protein	-	9e-8	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	4e-45	182	PtpAffx.224773.1.S1_s_at	pmrna43615	hypothetical protein	-	8e-5	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	1e-42	174	PtpAffx.224769.1.S1_x_at	pmrna43608	hypothetical protein	-	5e-12	At1g11340	S-locus lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	1e-42	174	PtpAffx.224769.1.S1_at	pmrna43608	hypothetical protein	-	5e-12	At1g11340	S-locus lectin protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-36	155	PtpAffx.225228.1.S1_s_at	pmrna44419	hypothetical protein	-	8e-11	At4g21370	S-locus protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	6e-35	149	Ptp.7041.1.S1_at	DN489067	hypothetical protein	-	1e-8	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	5e-23	109	PtpAffx.225224.1.S1_at	pmrna44415	hypothetical protein	-	8e-5	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	36	Arabidopsis thaliana	At4g23260	828425	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	34	Glycine max	Gma.17557.1.A1_at	BU548455	-	-	1e-6	At4g00970	protein kinase family protein	C.G.	S.X.	Please select
0.03	9e-1	34	Hordeum vulgare	Contig25306_at	Contig25306	-	-	1e-3	At4g00970	protein kinase family protein	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	Os01g0784500	AK109693.1	-	Receptor-like protein kinase 4	4e-6	At1g11410	S-locus protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-1	36	Triticum aestivum	TaAffx.29175.1.S1_at	CA648855	-	-	1e-3	At1g61610	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Vitis vinifera	1621854_at	CF204105.1	hypothetical protein LOC100263919	-	4e+0	At4g21410	protein kinase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.3134.2.A1_at	AI770607	-	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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