Gene omics information

Query gene ID PtpAffx.146636.1.A1_at
Gene name calcium dependent protein kinase 16
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8397.0PtpAffx.146636.1.A1_atCV268823calcium dependent protein kinase 16-9e-15At5g66210CPK28S.X.H.G.
0.8096.0PtpAffx.41142.1.S1_atCV255722hypothetical protein-5e-1At5g05360unknown proteinS.X.H.G.
0.6791.1PtpAffx.10687.1.S1_atCV228454--3e-15At3g21865PEX22 (peroxin 22)S.X.H.G.
0.6187.0PtpAffx.19543.1.A1_atCV230303hypothetical protein-4e-1At1g54730sugar transporter, putativeS.X.H.G.
0.6086.0PtpAffx.13638.1.S1_a_atCV226837hypothetical protein-5e-4At4g14410basic helix-loop-helix (bHLH) family proteinS.X.H.G.
0.2136.5PtpAffx.43105.1.A1_a_atCV256606hypothetical protein-3e-2At5g66730zinc finger (C2H2 type) family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.799.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.797.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
4.896.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
4.395.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue series
4.295.6GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
4.095.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.594.3GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
3.393.7GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue series
2.992.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
2.892.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e-136PtpAffx.215582.1.S1_atpmrna29859hypothetical protein-3e-2At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)C.G.S.X.
0.016e-136PtpAffx.208943.1.S1_s_atpmrna17719hypothetical protein-2e-51At1g25350OVA9 (ovule abortion 9)C.G.S.X.
0.016e-136PtpAffx.208943.1.S1_atpmrna17719hypothetical protein-2e-51At1g25350OVA9 (ovule abortion 9)C.G.S.X.
0.023e+034PtpAffx.34797.1.S1_atCK093514--2e+0At5g46940invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.023e+034PtpAffx.2848.1.S1_a_atCV243610aquaporin, MIP family, PIP subfamily /// aquaporin, MIP family, PIP subfamily-3e-37At4g23400PIP1C.G.S.X.
0.023e+034PtpAffx.2848.1.S1_atCV243610aquaporin, MIP family, PIP subfamily-3e-37At4g23400PIP1C.G.S.X.
0.013e+034PtpAffx.219980.1.S1_atpmrna36190hypothetical protein-2e-28At4g17410zinc ion bindingC.G.S.X.
0.023e+034PtpAffx.216132.1.S1_atpmrna30727hypothetical protein-3e-64At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)C.G.S.X.
0.013e+034PtpAffx.211417.1.S1_atpmrna22374hypothetical protein-3e-9At4g33700CBS domain-containing proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.129e-1581Arabidopsis thalianaAt5g66210836753CPK28member of Calcium Dependent Protein Kinase---C.G.S.X.
0.382e-53210Glycine maxGmaAffx.23909.1.S1_atBU549105--2e-18At5g66210CPK28C.G.S.X.
0.079e-754Hordeum vulgareContig11154_atContig11154--1e-15At5g66210CPK28C.G.S.X.
0.111e-965Oryza sativaOs07g0409900AF194414.2-Protein kinase domain containing protein6e-33At2g17890CPK16C.G.S.X.
0.108e-652Triticum aestivumTaAffx.71016.1.A1_atBE424472--1e+0At3g22930calmodulin, putativeC.G.S.X.
0.363e-67254Vitis vinifera1608587_atCD799705hypothetical protein LOC100248850-9e-21At5g66210CPK28C.G.S.X.
0.023e+032Zea maysZmAffx.882.1.A1_atAI770805--3e+0At1g18970GLP4 (GERMIN-LIKE PROTEIN 4)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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