CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.146199.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.146199.1.A1_s_at CV272864 hypothetical protein - 2e-1 At2g16860 GCIP-interacting family protein S.X. H.G.
0.50 78.6 PtpAffx.18334.1.A1_at CV232661 hypothetical protein - 2e-57 At1g32130 - S.X. H.G.
0.50 78.6 PtpAffx.128896.1.S1_s_at CN520124 - - 8e-7 At2g21510 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.48 75.4 PtpAffx.26405.3.A1_at BU830440 f-box family protein - 5e-10 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) S.X. H.G.
0.44 71.9 Ptp.5075.2.S1_s_at AJ780256 - - 2e-59 At1g61150 - S.X. H.G.
0.43 69.7 PtpAffx.9731.1.S1_at CV255821 hypothetical protein - 1e+1 At5g44582 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 95.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.84 6e-166 583 PtpAffx.146199.1.A1_at CV272864 hypothetical protein - 2e-1 At2g16860 GCIP-interacting family protein C.G. S.X.
0.37 3e-75 282 PtpAffx.204309.1.S1_at pmrna8484 hypothetical protein - 6e-38 At2g16860 GCIP-interacting family protein C.G. S.X.
0.51 4e-59 228 PtpAffx.146199.3.A1_at DN487009 hypothetical protein - 5e-22 At2g16860 GCIP-interacting family protein C.G. S.X.
0.51 4e-59 228 PtpAffx.146199.3.A1_s_at DN487009 hypothetical protein - 5e-22 At2g16860 GCIP-interacting family protein C.G. S.X.
0.01 5e+0 32 PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) C.G. S.X.
0.03 5e+0 32 PtpAffx.45880.1.A1_at CK090712 - - 5e+0 At3g27410 unknown protein C.G. S.X.
0.01 5e+0 32 PtpAffx.224761.1.S1_at pmrna43595 BED finger-nbs-lrr resistance protein - 4e-1 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) C.G. S.X.
0.03 5e+0 32 PtpAffx.223914.1.S1_s_at pmrna42136 BED finger-nbs-lrr resistance protein /// hypothetical protein - 1e+0 At3g12900 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 5e+0 32 PtpAffx.217083.1.S1_at pmrna32222 hypothetical protein - 6e-2 At4g10890 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-1 36 Arabidopsis thaliana At2g16860 816187 GCIP-interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAV - - - C.G. S.X.
0.14 9e-17 87 Glycine max GmaAffx.52867.1.A1_at AW310514 - - 3e-15 At2g16860 GCIP-interacting family protein C.G. S.X.
0.04 6e+0 30 Hordeum vulgare HK05E07r_at HK05E07r - - 2e+0 At3g55677 - C.G. S.X.
0.03 6e+0 32 Oryza sativa Os08g0419700 9636.m03239 - - 1e+0 At4g17585 unknown protein C.G. S.X.
0.04 2e-1 36 Triticum aestivum Ta.15902.1.S1_at CA500194 - - 3e+0 At2g30370 allergen-related C.G. S.X.
0.11 3e-10 63 Vitis vinifera 1611655_at CB913871 - - 3e-32 At2g16860 GCIP-interacting family protein C.G. S.X.
0.03 6e+0 30 Zea mays Zm.3270.1.A1_at BE638734 - - 8e-1 At2g27315 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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