CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.145.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.145.1.A1_at CV269750 hypothetical protein - 2e-3 At1g33700 catalytic/ glucosylceramidase S.X. H.G.
0.63 88.1 PtpAffx.213504.1.S1_at pmrna26400 hypothetical protein - 1e-22 At4g30080 ARF16 (AUXIN RESPONSE FACTOR 16) S.X. H.G.
0.55 82.2 PtpAffx.22915.1.A1_at CV227207 hypothetical protein - 2e-15 At2g29660 zinc finger (C2H2 type) family protein S.X. H.G.
0.50 78.6 PtpAffx.5537.1.A1_at CV244540 - - 2e+0 At5g07600 oleosin / glycine-rich protein S.X. H.G.
0.43 69.7 PtpAffx.208295.1.S1_at pmrna16497 hypothetical protein - 3e+0 At4g14723 - S.X. H.G.
0.36 61.6 PtpAffx.212481.1.S1_at pmrna24448 hypothetical protein - 1e-19 At2g40470 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.3 99.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
17.7 99.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
16.9 99.6 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.4 82.3 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
1.2 79.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.1 78.0 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-10 67 PtpAffx.216718.1.S1_x_at pmrna31678 hypothetical protein - 5e-34 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
0.05 2e-6 54 Ptp.6068.1.S1_s_at DN486901 hypothetical protein - 2e-38 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
0.02 1e-1 38 PtpAffx.146161.1.S1_at CX173062 hypothetical protein - 2e-40 At5g53860 emb2737 (embryo defective 2737) C.G. S.X.
0.03 5e-1 36 PtpAffx.204721.1.S1_at pmrna9302 hypothetical protein - 3e-1 At1g18630 GR-RBP6 (glycine-rich RNA-binding protein 6) C.G. S.X.
0.02 5e-1 36 PtpAffx.114066.1.A1_at CV272588 hypothetical protein - 2e+0 At3g20966 unknown protein C.G. S.X.
0.04 2e+0 34 PtpAffx.212305.1.S1_at pmrna24129 hypothetical protein - 6e-9 At2g40740 WRKY55 C.G. S.X.
0.03 2e+0 34 PtpAffx.209449.1.S1_at pmrna18723 proline transporter - 1e+1 At5g59845 gibberellin-regulated family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.204597.1.S1_s_at pmrna9026 hypothetical protein - 6e-42 At4g34610 BLH6 (BELL1-LIKE HOMEODOMAIN 6) C.G. S.X.
0.01 2e+0 34 PtpAffx.204597.1.S1_at pmrna9026 hypothetical protein - 6e-42 At4g34610 BLH6 (BELL1-LIKE HOMEODOMAIN 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-3 44 Arabidopsis thaliana At1g33700 840261 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOA - - - C.G. S.X.
0.07 1e-7 57 Glycine max GmaAffx.19904.1.S1_at BU761513 - - 1e-33 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
0.14 5e-5 48 Hordeum vulgare Contig13060_at Contig13060 - - 5e-10 At4g10060 catalytic/ glucosylceramidase C.G. S.X.
0.03 2e-1 38 Oryza sativa Os11g0242100 AK069387.1 - Protein of unknown function DUF608 domaincontaining protein 8e-12 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
0.08 6e-3 42 Triticum aestivum Ta.20469.1.S1_at CA642463 - - 1e-14 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
0.08 5e-7 54 Vitis vinifera 1606839_at CF403271 hypothetical protein LOC100246502 - 1e-4 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
0.05 4e-5 48 Zea mays Zm.18304.1.S1_at CO522721 - - 6e-14 At5g49900 catalytic/ glucosylceramidase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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