Gene omics information

Query gene ID PtpAffx.144850.2.S1_at
Gene name chromo domain protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.144850.2.S1_atBU831488chromo domain protein-2e-9At5g17690TFL2 (TERMINAL FLOWER 2)S.X.H.G.
0.3559.7PtpAffx.210540.1.S1_atpmrna20664hypothetical protein-4e-5At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)S.X.H.G.
0.3357.5PtpAffx.214471.1.S1_s_atpmrna28145hypothetical protein-4e-17At5g58003CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4)S.X.H.G.
0.3153.7PtpAffx.211197.1.S1_atpmrna22007hypothetical protein-4e-15At3g20550DDL (DAWDLE)S.X.H.G.
0.2747.1PtpAffx.17087.1.S1_s_atCF230618hypothetical protein-2e-31At1g19880regulator of chromosome condensation (RCC1) family proteinS.X.H.G.
0.2441.8Ptp.7344.1.S1_s_atCX655055hypothetical protein-1e-60At2g44680CKB4 (CASEIN KINASE II BETA SUBUNIT 4)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.498.6GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
7.898.4GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
7.698.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
6.497.7GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.395.8GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.395.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
4.295.6GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
4.195.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.890745PtpAffx.144850.2.S1_a_atBU831488chromodomain protein-2e-9At5g17690TFL2 (TERMINAL FLOWER 2)C.G.S.X.
0.593e-116418PtpAffx.144850.1.S1_atAJ769562chromodomain protein-2e-12At5g17690TFL2 (TERMINAL FLOWER 2)C.G.S.X.
0.025e-136PtpAffx.95297.1.S1_s_atCV253378hypothetical protein-1e-1At5g01790unknown proteinC.G.S.X.
0.035e-136PtpAffx.214567.1.S1_atpmrna28299hypothetical protein-1e+0At5g65220ribosomal protein L29 family proteinC.G.S.X.
0.035e-136PtpAffx.214567.1.S1_s_atpmrna28299hypothetical protein-1e+0At5g65220ribosomal protein L29 family proteinC.G.S.X.
0.035e-136PtpAffx.154101.1.A1_atCV245337multidrug/pheromone exporter, MDR family, ABC transporter family /// multidrug/pheromone exporter, MDR family, ABC transporter family-1e+0At5g1520040S ribosomal protein S9 (RPS9B)C.G.S.X.
0.032e+034PtpAffx.216919.1.S1_atpmrna31993hypothetical protein-3e-1At1g23050hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.012e+034PtpAffx.209803.1.S1_x_atpmrna19339hypothetical protein-2e-10At1g29720protein kinase family proteinC.G.S.X.
0.022e+034PtpAffx.209630.1.S1_x_atpmrna19029hypothetical protein-1e-1At2g44000-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-963Arabidopsis thalianaAt5g17690831635TFL2 (TERMINAL FLOWER 2)Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.---C.G.S.X.
0.051e-138Glycine maxGmaAffx.65892.1.A1_atCD406505--7e-1At5g13250unknown proteinC.G.S.X.
0.033e-342Hordeum vulgareContig14591_atContig14591--5e+0At4g00335RHB1AC.G.S.X.
0.027e-136Oryza sativaOs03g0326500AK058426.1-The start codon is not identified.4e-1At5g61440ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)C.G.S.X.
0.044e-136Triticum aestivumTaAffx.50679.1.S1_atCA737022--5e-1At2g27035plastocyanin-like domain-containing proteinC.G.S.X.
0.034e-134Vitis vinifera1612120_atCD718075--3e-1At5g53490thylakoid lumenal 17.4 kDa protein, chloroplastC.G.S.X.
0.039e+030Zea maysZmAffx.562.1.A1_atAI714592--3e+0At4g17483palmitoyl protein thioesterase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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