Gene omics information

Query gene ID	PtpAffx.144840.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	PtpAffx.144840.1.S1_at	DN499480	hypothetical protein	-	5e-3	At3g26790	FUS3 (FUSCA 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.209170.1.S1_at	pmrna18156	hypothetical protein	-	4e-1	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.18825.6.A1_at	CV255492	hypothetical protein	-	3e-23	At5g12190	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.40910.1.S1_at	BU830361	hypothetical protein	-	1e+0	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.2085.2.S1_s_at	CF231740	hypothetical protein	-	2e-30	At1g22300	GRF10 (GENERAL REGULATORY FACTOR 10)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.206401.1.S1_at	pmrna12715	hypothetical protein	-	2e+0	At5g10730	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.6024.2.S1_a_at	BU825018	hypothetical protein	-	3e-2	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-4	48	PtpAffx.58859.1.A1_s_at	CV230500	bromodomain protein	-	9e-2	At4g26130	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-4	48	PtpAffx.224652.1.S1_s_at	pmrna43401	hypothetical protein	-	8e-8	At2g01190	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-4	48	PtpAffx.223237.1.S1_at	pmrna41126	hypothetical protein	-	2e-8	At3g27010	AT-TCP20	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-4	48	PtpAffx.201625.1.S1_at	pmrna3216	hypothetical protein	-	7e-28	At1g75520	SRS5 (SHI-RELATED SEQUENCE 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-4	48	PtpAffx.200136.1.S1_at	pmrna249	hypothetical protein	-	4e-2	At2g43030	ribosomal protein L3 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-4	48	PtpAffx.144078.1.S1_at	CK107271	hypothetical protein	-	2e-21	At4g37130	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-4	46	PtpAffx.217035.1.S1_at	pmrna32151	hypothetical protein	-	1e-7	At1g72390	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-4	46	PtpAffx.217035.1.S1_x_at	pmrna32151	hypothetical protein	-	1e-7	At1g72390	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-4	46	PtpAffx.217035.1.S1_s_at	pmrna32151	hypothetical protein	-	1e-7	At1g72390	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-3	42	Arabidopsis thaliana	At3g26790	822293	FUS3 (FUSCA 3)	Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-4	48	Glycine max	Gma.1985.1.S1_at	AI736209	-	-	4e-6	At3g26790	FUS3 (FUSCA 3)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig16848_at	Contig16848	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	C.G.	S.X.	Please select
0.05	1e-2	42	Oryza sativa	OsAffx.16788.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-5	48	Triticum aestivum	TaAffx.104796.1.S1_x_at	CA744716	-	-	3e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.03	6e-3	40	Vitis vinifera	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	36	Zea mays	ZmAffx.888.1.A1_at	AI770836	-	-	9e-3	At5g66350	SHI (SHORT INTERNODES)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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