CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.144822.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.144822.1.S1_at DN500556 - - 1e+0 At5g66650 unknown protein S.X. H.G.
0.77 94.9 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
0.73 93.6 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - S.X. H.G.
0.60 86.0 PtpAffx.220631.1.S1_at pmrna37041 hypothetical protein - 7e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.60 86.0 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase S.X. H.G.
0.59 84.9 Ptp.3447.1.A1_at DN492951 - - 2e+0 At3g06000 leucine-rich repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.9 99.7 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
12.3 99.3 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
11.5 99.2 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1027 PtpAffx.144822.1.S1_a_at DN500556 - - 1e+0 At5g66650 unknown protein C.G. S.X.
0.03 9e-2 38 PtpAffx.94825.1.A1_at CV269831 hypothetical protein - 9e-2 At1g11915 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.205261.1.S1_at pmrna10430 hypothetical protein - 9e-59 At3g13530 MAPKKK7 C.G. S.X.
0.03 4e-1 36 PtpAffx.159790.1.A1_at CV258860 - - 2e+0 At1g35625 peptidase/ protein binding / zinc ion binding C.G. S.X.
0.02 1e+0 34 PtpAffx.224798.1.S1_at pmrna43653 hypothetical protein - 3e-25 At1g79740 DNA binding / protein dimerization C.G. S.X.
0.02 1e+0 34 PtpAffx.221163.1.S1_at pmrna37817 hypothetical protein - 2e-66 At4g34310 unknown protein C.G. S.X.
0.02 1e+0 34 PtpAffx.216713.1.S1_at pmrna31668 hypothetical protein - 7e-7 At3g45290 MLO3 (MILDEW RESISTANCE LOCUS O 3) C.G. S.X.
0.01 1e+0 34 PtpAffx.212618.1.S1_at pmrna24702 hypothetical protein - 2e-17 At3g49170 EMB2261 (embryo defective 2261) C.G. S.X.
0.02 1e+0 34 PtpAffx.146740.1.A1_at CV263973 - - 3e-2 At3g24590 PLSP1 (plastidic type I signal peptidase 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g66650 836797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA - - - C.G. S.X.
0.05 1e+0 34 Glycine max GmaAffx.21595.1.S1_at BE059253 - - 4e-2 At5g56880 unknown protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare HV_CEa0015F23r2_x_at HV_CEa0015F23r2 - - 3e+0 At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein C.G. S.X.
0.02 1e-1 38 Oryza sativa Os11g0432600 AK059916.1 - Beta-ketoacyl reductase GL8B 3e+0 At4g31580 SRZ-22 C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.79383.1.S1_at CA716967 - - 6e-2 At1g49010 myb family transcription factor C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1616437_at CF404467 hypothetical protein LOC100242041 - 1e+0 At2g07505 unknown protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.6083.2.S1_at AF457979.1 - - 1e-33 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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