CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.144812.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 S.X. H.G.
0.67 91.1 PtpAffx.25673.1.S1_at CA823367 hypothetical protein - 5e-3 At2g18750 calmodulin-binding protein S.X. H.G.
0.60 86.0 PtpAffx.206424.1.S1_x_at pmrna12759 hypothetical protein - 8e-9 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) S.X. H.G.
0.60 86.0 PtpAffx.206424.1.S1_at pmrna12759 hypothetical protein - 8e-9 At3g52400 SYP122 (SYNTAXIN OF PLANTS 122) S.X. H.G.
0.46 73.7 PtpAffx.136410.1.S1_at CF936887 - - 5e-1 At3g55880 unknown protein S.X. H.G.
0.36 61.6 PtpAffx.7249.1.S1_at BI124548 hypothetical protein - 9e-2 At2g26530 AR781 S.X. H.G.
0.29 50.5 PtpAffx.201784.1.S1_at pmrna3559 hypothetical protein - 6e-7 At5g42440 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.1 99.7 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
15.7 99.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.1 97.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.60 6e-161 567 PtpAffx.202070.1.S1_at pmrna4131 hypothetical protein - 8e-6 At2g26530 AR781 C.G. S.X.
0.10 1e-29 131 PtpAffx.7249.1.S1_at BI124548 hypothetical protein - 9e-2 At2g26530 AR781 C.G. S.X.
0.03 3e-2 40 Ptp.3577.1.S1_at CK099172 hypothetical protein - 4e-1 At5g42420 transporter-related C.G. S.X.
0.03 3e-2 40 Ptp.1931.1.A1_at CK093159 hypothetical protein - 5e-6 At3g50940 AAA-type ATPase family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.65560.1.S1_at CV240577 - - 9e-13 At5g19980 integral membrane family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.4406.1.A1_at CV254066 hypothetical protein - 2e-3 At1g27510 - C.G. S.X.
0.02 1e-1 38 PtpAffx.3461.2.S1_at CV235682 hypothetical protein - 5e-69 At2g41250 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.3461.2.S1_a_at CV235682 hypothetical protein - 5e-69 At2g41250 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.210413.1.S1_s_at pmrna20461 hypothetical protein - 5e-11 At1g17970 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g04630 819621 WDL1 Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development. - - - C.G. S.X.
0.05 1e-1 38 Glycine max GmaAffx.3761.1.S1_s_at BF066161 - - 7e+0 At5g54980 integral membrane family protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare EBro08_SQ007_N16_at EBro08_SQ007_N16 - - 2e+0 At2g19690 PLA2-BETA (PHOSPHOLIPASE A2-BETA) C.G. S.X.
0.04 2e-1 38 Oryza sativa OsAffx.25383.1.S1_at - - - 0 C.G. S.X.
0.04 6e-3 42 Triticum aestivum Ta.9534.2.A1_a_at BJ307813 - - 5e-6 At3g15380 choline transporter-related C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1607509_at CB971629 - - 4e+0 At2g29310 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.1533.1.S1_at 40794996-14 - - 3e+0 At3g53610 ATRAB8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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