CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.143501.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.143501.1.S1_at BU883274 hypothetical protein - 1e+0 At2g31380 STH S.X. H.G.
0.12 19.6 PtpAffx.55242.1.S1_at CV236376 beta-ketoacyl-coa synthase family protein - 8e-17 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) S.X. H.G.
0.09 14.6 PtpAffx.208057.1.S1_at pmrna15992 hypothetical protein - 5e-2 At1g15000 scpl50 (serine carboxypeptidase-like 50) S.X. H.G.
0.08 12.9 PtpAffx.212195.1.S1_at pmrna23908 hypothetical protein - 1e-33 At5g16810 ATP binding / protein kinase S.X. H.G.
0.05 8.3 PtpAffx.8895.1.S1_at CV267481 hypothetical protein - 7e-1 At4g10596 unknown protein S.X. H.G.
0.05 8.3 PtpAffx.219605.1.S1_at pmrna35564 hypothetical protein - 2e-2 At1g58440 XF1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 98.8 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.9 98.0 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.4 97.7 GSM372100 Clone3200_LPI5_N+_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.2 97.6 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3 96.9 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.9 95.1 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3 93.7 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 PtpAffx.224437.1.S1_at pmrna42960 hypothetical protein - 1e-3 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.02 2e+0 34 PtpAffx.9582.1.A1_at CV229894 - - 4e-57 At1g45000 26S proteasome regulatory complex subunit p42D, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.9582.1.A1_a_at CV229894 - - 4e-57 At1g45000 26S proteasome regulatory complex subunit p42D, putative C.G. S.X.
0.02 2e+0 34 PtpAffx.28713.1.A1_at CV258396 hypothetical protein - 1e-5 At4g12570 UPL5 (UBIQUITIN PROTEIN LIGASE 5) C.G. S.X.
0.01 2e+0 34 PtpAffx.208807.1.S1_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.208807.1.S1_x_at pmrna17463 hypothetical protein - 9e-103 At1g26850 dehydration-responsive family protein C.G. S.X.
0.03 7e+0 32 PtpAffx.9582.3.A1_a_at BU874390 hypothetical protein - 6e-52 At5g43010 RPT4A C.G. S.X.
0.03 7e+0 32 PtpAffx.9582.3.A1_at BU874390 hypothetical protein - 6e-52 At5g43010 RPT4A C.G. S.X.
0.03 7e+0 32 PtpAffx.86744.1.A1_at DN492144 - - 5e+0 At5g42520 ATBPC6 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.1895.1.A1_at AW309584 - - 3e-1 At1g19970 ER lumen protein retaining receptor family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig26_at Contig26 - - 2e-17 At5g59690 histone H4 C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.7670.1.S1_at - - - 0 C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.86177.1.S1_at CA615245 - - 7e-2 At3g20530 protein kinase family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1610171_at CF511133 hypothetical protein LOC100263800 - 2e-2 At2g45100 RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding C.G. S.X.
0.02 9e+0 30 Zea mays Zm.16117.1.S1_at CF075483 - - 3e-1 At5g04200 AtMC9 (metacaspase 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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