Gene omics information

Query gene ID PtpAffx.142690.2.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.142690.2.S1_s_atCX185710hypothetical protein-5e-34At3g03340UNE6 (unfertilized embryo sac 6)S.X.H.G.
0.9199.2PtpAffx.151246.1.S1_s_atAJ774095hypothetical protein-1e-25At4g06599ubiquitin family proteinS.X.H.G.
0.8096.0PtpAffx.40987.1.A1_atCV235485hypothetical protein-3e-16At5g08500transmembrane CLPTM1 family proteinS.X.H.G.
0.6791.1PtpAffx.203894.1.S1_atpmrna7692hypothetical protein-0At4g21710NRPB2S.X.H.G.
0.6791.1PtpAffx.208687.1.S1_s_atpmrna17234hypothetical protein-1e-15At1g15130hydroxyproline-rich glycoprotein family proteinS.X.H.G.
0.6086.0PtpAffx.213112.1.S1_atpmrna25658hypothetical protein-1e-20At3g02680NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.099.1GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
10.599.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
7.698.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.188.6GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
2.088.0GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.640940PtpAffx.212289.1.S1_atpmrna24091hypothetical protein-7e-37At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.580708PtpAffx.223368.1.S1_atpmrna41333hypothetical protein-3e-33At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.025e-136PtpAffx.222741.1.S1_atpmrna40361hypothetical protein-2e+0At5g642502-nitropropane dioxygenase family / NPD familyC.G.S.X.
0.032e+034PtpAffx.50577.1.A1_atCV239553hypothetical protein-4e-1At2g25720unknown proteinC.G.S.X.
0.012e+034PtpAffx.225723.1.S1_atpmrna45289cc-nbs-lrr resistance protein-1e-1At3g14470disease resistance protein (NBS-LRR class), putativeC.G.S.X.
0.022e+034PtpAffx.202353.1.S1_atpmrna4725hypothetical protein-5e-17At4g02210unknown proteinC.G.S.X.
0.027e+032PtpAffx.75830.1.A1_atCN520644hypothetical protein-2e-2At3g48630unknown proteinC.G.S.X.
0.027e+032PtpAffx.66619.1.S1_atCV258048hypothetical protein-3e-2At1g50440zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.037e+032PtpAffx.59655.1.S1_atDN488428integral membrane single C2 domain protein-5e+0At5g37220zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.255e-34145Arabidopsis thalianaAt3g03340821276UNE6 (unfertilized embryo sac 6)F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;MOFPBVA---C.G.S.X.
0.296e-22105Glycine maxGma.17924.1.S1_atBM522947--5e-36At3g03340UNE6 (unfertilized embryo sac 6)C.G.S.X.
0.201e-1479Hordeum vulgareContig5159_atContig5159--1e-23At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.141e-1481Oryza sativaOs03g0843500AK067985.1-Sarcoplasmic reticulum protein (With alternativesplicing)3e-23At5g17440LUC7 N_terminus domain-containing proteinC.G.S.X.
0.031e+034Triticum aestivumTaAffx.58974.1.S1_atCA611030--6e-2At3g46200aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)C.G.S.X.
0.036e+030Vitis vinifera1620168_atCF202067.1--2e+0At1g30460CPSF30C.G.S.X.
0.049e+030Zea maysZmAffx.491.1.A1_atAI691520--9e+0At5g11412nucleic acid binding / nucleotide bindingC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage