Gene omics information

Query gene ID PtpAffx.141519.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5683.9PtpAffx.141519.1.S1_atAJ774599hypothetical protein-2e-120At5g64070PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)S.X.H.G.
0.6187.0Ptp.4771.1.S1_atBU893475hypothetical protein-1e-10At4g19670zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.6086.0PtpAffx.215067.1.S1_atpmrna29028hypothetical protein-3e-5At2g21120unknown proteinS.X.H.G.
0.3052.0PtpAffx.23095.1.S1_atCX177404hypothetical protein-1e-3At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)S.X.H.G.
0.2543.6PtpAffx.84497.1.S1_s_atCF231611hypothetical protein-9e-17At3g18140transducin family protein / WD-40 repeat family proteinS.X.H.G.
0.2543.6PtpAffx.93043.1.S1_atCX178086hypothetical protein-4e-4At1g29800phosphoinositide binding / zinc ion bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.894.9GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.193.2GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.791.8GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.691.3GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.490.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.109e-1685PtpAffx.107787.1.A1_atCV261622--5e+0At3g51325zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.021e-242PtpAffx.3173.10.S1_a_atCV266631hypothetical protein-2e-9At3g10260reticulon family proteinC.G.S.X.
0.021e-242PtpAffx.3173.1.S1_a_atDN483936hypothetical protein-3e-9At5g41010NRPB12C.G.S.X.
0.021e-242PtpAffx.3173.1.S1_x_atDN483936hypothetical protein-3e-9At5g41010NRPB12C.G.S.X.
0.035e-240PtpAffx.37022.2.A1_atCV279065hypothetical protein-2e+0At1g76840unknown proteinC.G.S.X.
0.015e-240PtpAffx.204623.1.S1_atpmrna9090hypothetical protein-3e-142At1g49340ATPI4K ALPHAC.G.S.X.
0.027e-136PtpAffx.36367.1.S1_atCV228234--1e-4At4g10265wound-responsive protein, putativeC.G.S.X.
0.027e-136PtpAffx.208726.1.S1_atpmrna17303hypothetical protein-2e-18At3g23130SUP (SUPERMAN)C.G.S.X.
0.027e-136PtpAffx.208190.1.S1_atpmrna16296hypothetical protein-2e-20At3g23130SUP (SUPERMAN)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.272e-120432Arabidopsis thalianaAt5g64070836528PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta1. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta1 is 83% identical to PI-4kbeta2 encoded by At5g09350. Interacts with the RabA4b GTPase. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta2, leads to the formation of abnormal root hairs.---C.G.S.X.
0.592e-137490Glycine maxGmaAffx.7564.2.S1_atBG509629--2e-126At5g64070PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)C.G.S.X.
0.135e-1891Hordeum vulgareContig18940_atContig18940--6e-13At5g09350PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2)C.G.S.X.
0.254e-65250Oryza sativaOs11g0209700AK068331.1-Phosphatidylinositol 4-kinase (EC 2.7.1.67)4e-6At5g64070PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)C.G.S.X.
0.022e+034Triticum aestivumTa.6282.1.S1_a_atBJ249264--1e-4At5g53480importin beta-2, putativeC.G.S.X.
0.024e-238Vitis vinifera1614137_atCF513360--1e-16At1g58200MSL3 (MscS-LIKE 3)C.G.S.X.
0.024e+032Zea maysZm.5258.1.A1_atAI615160--8e+0At4g01595ATP binding / MAP kinase/ protein kinaseC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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