Gene omics information

Query gene ID PtpAffx.141421.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8697.4PtpAffx.141421.1.S1_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)S.X.H.G.
0.7393.6PtpAffx.37792.1.A1_atCV239289hypothetical protein-2e-18At5g20280ATSPS1F (sucrose phosphate synthase 1F)S.X.H.G.
0.7393.6PtpAffx.141421.1.S1_s_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)S.X.H.G.
0.6791.1PtpAffx.81253.1.S1_atCX184422hypothetical protein-3e-7At4g04460aspartyl protease family proteinS.X.H.G.
0.5784.2PtpAffx.206816.1.S1_atpmrna13533hypothetical protein-1e+0At5g25220KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)S.X.H.G.
0.4369.7Ptp.5632.3.S1_atCA933999--3e-67At5g60360AALP (Arabidopsis aleurain-like protease)S.X.H.G.
0.3559.7PtpAffx.152352.1.S1_s_atCN523321hypothetical protein-9e-49At4g37550formamidase, putative / formamide amidohydrolase, putativeS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.398.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.398.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.397.7GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.997.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.597.1GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.597.1GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.296.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.596.1GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.395.8GSM244434Mlp infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.195.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001972PtpAffx.141421.1.S1_s_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.320898Ptp.1466.1.S1_atCK093003hypothetical protein-3e-87At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.081e-20101PtpAffx.211245.1.S1_atpmrna22073hypothetical protein-4e-78At4g10120ATSPS4FC.G.S.X.
0.014e-240PtpAffx.200628.1.S1_x_atpmrna1222hypothetical protein-4e-1At5g03050unknown proteinC.G.S.X.
0.014e-240PtpAffx.200628.1.S1_s_atpmrna1222hypothetical protein-4e-1At5g03050unknown proteinC.G.S.X.
0.014e-240PtpAffx.200628.1.S1_atpmrna1222hypothetical protein-4e-1At5g03050unknown proteinC.G.S.X.
0.023e+034PtpAffx.89860.2.S1_s_atCV259551hypothetical protein-7e-9At4g10800-C.G.S.X.
0.023e+034PtpAffx.85458.1.S1_atBU874789--1e+0At3g42560unknown proteinC.G.S.X.
0.023e+034PtpAffx.221561.1.S1_atpmrna38502--1e-2At5g37160tRNA-splicing endonuclease positive effector-relatedC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.401e-158559Arabidopsis thalianaAt5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.---C.G.S.X.
0.425e-119428Glycine maxGma.2097.1.S1_atAW309489--2e-76At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.097e-1477Hordeum vulgareContig7277_atContig7277--3e-8At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
0.117e-1479Oryza sativaOs08g0301500AK101676.1-Sucrose-phosphate synthase 2 (EC 2.4.1.14)(Fragment)2e-31At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.144e-859Triticum aestivumTa.4256.1.S1_atCD910522Sucrose-phosphate synthase 2-1e-13At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.646e-180628Vitis vinifera1612883_atCF213322hypothetical protein LOC100241955-2e-95At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.121e-550Zea maysZm.3748.1.S1_atCF624336--4e-23At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage