Gene omics information

Query gene ID	PtpAffx.140892.2.A1_a_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.140892.2.A1_a_at	CV241766	-	-	3e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.217155.1.S1_at	pmrna32306	hypothetical protein	-	2e+1	At2g36030	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.214521.1.S1_at	pmrna28232	hypothetical protein	-	3e-2	At5g25340	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.136021.1.A1_at	CK092890	-	-	6e+0	At4g10457	SCRL1 (SCR-Like 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.37661.1.A1_at	CV243900	-	-	1e+0	At1g18570	MYB51 (MYB DOMAIN PROTEIN 51)	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.2026.1.S1_at	BI125606	-	-	4e+0	At5g62060	F-box family protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.4	99.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.1	96.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	668	PtpAffx.140892.1.A1_at	CV241251	-	-	6e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	1e-10	67	PtpAffx.138953.1.A1_at	BP930399	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	3e-5	50	PtpAffx.29374.1.A1_at	BP930524	-	-	3e+0	At3g06840	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	1e-4	48	PtpAffx.86539.1.S1_at	DN500571	-	-	1e+0	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-3	44	PtpAffx.5514.4.A1_at	CV228069	-	-	7e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-3	42	PtpAffx.249.539.A1_at	CV264974	-	-	7e+0	Atmg01110	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-3	42	PtpAffx.119426.1.A1_at	BP932700	-	-	1e-3	At2g27370	integral membrane family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-3	42	PtpAffx.114374.1.A1_at	CV261397	hypothetical protein	-	2e+0	At4g20000	VQ motif-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	PtpAffx.85791.1.S1_at	CK097442	-	-	6e-3	At1g68160	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At5g64905	836614	PROPEP3 (Elicitor peptide 3 precursor)	F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.63365.1.S1_at	BE347228	-	-	1e+0	At5g49590	unknown protein	C.G.	S.X.	Please select
0.03	4e-2	38	Hordeum vulgare	Contig4031_x_at	Contig4031	-	-	5e+0	Atmg00270	-	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	Os02g0282700	9630.m01710	-	-	2e-3	At3g57950	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.52063.1.S1_at	CA713823	-	-	8e-3	At2g42190	unknown protein	C.G.	S.X.	Please select
0.05	3e-1	34	Vitis vinifera	1620874_x_at	CF200637.1	-	-	3e-2	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.03	3e-2	38	Zea mays	Zm.3153.3.S1_a_at	CF624577	B12D protein	-	1e-3	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage