Gene omics information

Query gene ID	PtpAffx.140514.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.140514.1.A1_at	CV255394	-	-	2e-1	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.80487.1.A1_at	DN484662	-	-	5e+0	At5g44265	lipid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.224460.1.S1_x_at	pmrna43015	hypothetical protein	-	6e-1	At2g38780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.225048.1.S1_at	pmrna44125	hypothetical protein	-	2e-1	At1g48980	oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.220631.1.S1_at	pmrna37041	hypothetical protein	-	7e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
76.2	100.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.8	98.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.5	63.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.5	63.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.4	59.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
0.4	59.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.4	59.5	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
0.3	55.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
0.3	55.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	PtpAffx.249.766.A1_at	CV263836	hypothetical protein	-	3e-1	At1g74930	ORA47	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.214500.1.S1_at	pmrna28195	hypothetical protein	-	2e-1	At4g35900	FD	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	1e+0	34	PtpAffx.200028.1.S1_at	pmrna50	hypothetical protein	-	9e-14	At5g11950	protein homodimerization	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	1e+0	34	PtpAffx.200028.1.S1_x_at	pmrna50	hypothetical protein	-	9e-14	At5g11950	protein homodimerization	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.11743.1.A1_at	CV254363	-	-	1e+1	At5g52960	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.108227.1.A1_at	CV248879	-	-	3e-1	At1g47720	OSB1 (Organellar Single-stranded)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e+0	32	PtpAffx.51006.2.A1_a_at	CV255657	hypothetical protein	-	1e+0	At3g29785	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	4e+0	32	PtpAffx.51006.2.A1_at	CV255657	hypothetical protein	-	1e+0	At3g29785	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e+0	32	PtpAffx.41881.1.S1_at	DN484168	-	-	3e-6	At4g11460	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Arabidopsis thaliana	At1g13080	837865	CYP71B2 (CYTOCHROME P450 71B2)	cytochrome P450 monooxygenase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.64556.2.A1_at	BE657355	-	-	7e-1	At1g50570	C2 domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig23592_at	Contig23592	-	-	3e+0	At5g50820	anac097 (Arabidopsis NAC domain containing protein 97)	C.G.	S.X.	Please select
0.05	6e+0	32	Oryza sativa	Os06g0665450	9634.m04417	-	-	2e+0	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Triticum aestivum	TaAffx.82331.1.S1_at	CA673505	-	-	4e+0	At2g43450	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1619195_at	CD721413	hypothetical protein LOC100241177	-	6e-2	At5g48240	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	Zm.16594.4.S1_at	AW231557	-	-	3e+0	At4g17870	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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