CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.1404.2.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.1404.2.A1_a_at CV225922 hypothetical protein - 6e-5 At3g24315 AtSec20 S.X. H.G.
0.71 92.6 PtpAffx.24511.1.A1_at CV257244 hypothetical protein - 1e+0 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) S.X. H.G.
0.50 78.6 PtpAffx.62025.1.S1_at CV257977 - - 2e-43 At1g47640 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.70178.1.S1_s_at CV228915 hypothetical protein - 1e+0 At5g33330 RNase H domain-containing protein S.X. H.G.
0.33 57.5 PtpAffx.3484.1.S1_s_at DN489134 hypothetical protein - 2e-23 At2g28910 CXIP4 (CAX INTERACTING PROTEIN 4) S.X. H.G.
0.29 50.5 PtpAffx.13795.1.A1_at CK091278 hypothetical protein - 2e-9 At4g13980 AT-HSFA5 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 95.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 PtpAffx.200569.1.S1_at pmrna1123 hypothetical protein - 1e-12 At1g10910 - C.G. S.X.
0.04 1e+0 34 Ptp.4174.1.S1_at DN499099 hypothetical protein - 6e-8 At1g10910 - C.G. S.X.
0.02 5e+0 32 PtpAffx.36786.1.S1_at CV240505 hypothetical protein - 1e-48 At3g55620 emb1624 (embryo defective 1624) C.G. S.X.
0.03 5e+0 32 PtpAffx.249.468.A1_at CF119463 hypothetical protein - 3e-97 At1g56410 ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2) C.G. S.X.
0.03 5e+0 32 PtpAffx.249.485.S1_at CA933751 hypothetical protein - 1e-90 At3g09440 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) C.G. S.X.
0.01 5e+0 32 PtpAffx.249.10.S1_x_at CV272832 hypothetical protein - 0 At3g09440 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) C.G. S.X.
0.02 5e+0 32 PtpAffx.2376.1.S1_at CV241004 hypothetical protein - 6e-11 At1g01300 aspartyl protease family protein C.G. S.X.
0.03 5e+0 32 PtpAffx.224001.1.S1_s_at pmrna42230 hypothetical protein - 4e-1 At5g50370 adenylate kinase, putative C.G. S.X.
0.01 5e+0 32 PtpAffx.222966.1.S1_x_at pmrna40705 hypothetical protein - 2e-20 At5g18590 kelch repeat-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-5 48 Arabidopsis thaliana At3g24315 822020 AtSec20 F:molecular_function unknown;P:unknown;C:unknown;MFPO - - - C.G. S.X.
0.31 1e-9 63 Glycine max Gma.3805.1.S1_at CD487663 - - 6e-3 At3g24315 AtSec20 C.G. S.X.
0.07 7e-3 40 Hordeum vulgare Contig17104_at Contig17104 - - 1e-7 At3g24315 AtSec20 C.G. S.X.
0.04 2e+0 34 Oryza sativa Os06g0658600 9634.m04343 - - 2e+0 At5g56600 PRF3 (PROFILIN 3) C.G. S.X.
0.04 2e-1 36 Triticum aestivum TaAffx.59023.1.S1_at CA609778 - - 4e+0 At4g34680 GATA transcription factor 3, putative (GATA-3) C.G. S.X.
0.13 5e-12 69 Vitis vinifera 1620796_at CF208990 hypothetical LOC100245990 - 4e-5 At3g24315 AtSec20 C.G. S.X.
0.05 4e-1 34 Zea mays ZmAffx.205.1.A1_at AI670190 hypothetical protein LOC100276892 - 8e-1 At4g17520 nuclear RNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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