CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.140157.1.A1_at

Gene name cytochrome P450

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 97.4 PtpAffx.140157.1.A1_at CV268513 cytochrome P450 - 2e+0 At1g06580 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.47 74.6 PtpAffx.13856.1.S1_at CK088007 hypothetical protein - 6e-4 At3g57070 glutaredoxin family protein S.X. H.G.
0.46 73.7 PtpAffx.71590.1.S1_at DN484720 hypothetical protein - 2e-8 At5g53200 TRY (TRIPTYCHON) S.X. H.G.
0.44 71.9 PtpAffx.84439.1.A1_at CV228369 hypothetical protein - 5e-3 At5g03120 unknown protein S.X. H.G.
0.39 64.6 PtpAffx.119307.1.S1_at DN494321 hypothetical protein - 5e-10 At5g15740 unknown protein S.X. H.G.
0.38 63.7 Ptp.7965.1.S1_a_at DN502706 hypothetical protein - 1e+0 At5g43830 unknown protein S.X. H.G.
0.38 63.7 PtpAffx.73798.1.S1_at CV226761 hypothetical protein - 2e+0 At5g42500 disease resistance-responsive family protein S.X. H.G.
0.38 63.7 Ptp.7877.1.A1_s_at CV261347 glycosyltransferase - 1e-25 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) S.X. H.G.
0.36 61.6 PtpAffx.103912.1.S1_at CV256169 hypothetical protein - 2e+1 At4g22140 DNA binding / protein binding / zinc ion binding S.X. H.G.
0.35 59.7 PtpAffx.16347.1.A1_at DN489221 - - 3e+0 At1g03150 GCN5-related N-acetyltransferase (GNAT) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.3 99.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.7 98.9 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.4 98.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.9 98.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.4 97.7 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9 96.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 46 PtpAffx.207579.1.S1_s_at pmrna15042 cytochrome P450 - 7e-1 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.03 5e-1 36 PtpAffx.220904.1.S1_at pmrna37379 hypothetical protein - 4e+0 At5g57625 allergen V5/Tpx-1-related family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.218498.1.S1_at pmrna34143 - - 3e+0 At4g34881 unknown protein C.G. S.X.
0.04 5e-1 36 PtpAffx.213442.1.S1_s_at pmrna26280 hypothetical protein - 5e-1 At3g43180 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 5e-1 36 PtpAffx.212752.1.S1_at pmrna24942 hypothetical protein - 4e-13 At3g48120 unknown protein C.G. S.X.
0.04 5e-1 36 Ptp.6555.2.A1_at CK093518 - - 2e-10 At2g19520 FVE C.G. S.X.
0.02 2e+0 34 PtpAffx.4979.1.A1_at BP932079 hypothetical protein - 1e+0 At5g03760 ATCSLA09 C.G. S.X.
0.02 2e+0 34 PtpAffx.31521.1.A1_at CA821565 cytochrome P450 - 2e+0 At5g23420 HMGB6 C.G. S.X.
0.02 2e+0 34 PtpAffx.225870.1.S1_at pmrna45512 hypothetical protein - 2e+0 At5g22650 HD2B (HISTONE DEACETYLASE 2B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At1g06580 837169 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA - - - C.G. S.X.
0.03 4e-2 40 Glycine max GmaAffx.55917.1.S1_at BE657290 - - 1e+0 At5g24900 CYP714A2 C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig3383_at Contig3383 - - 4e+0 At4g27250 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family C.G. S.X.
0.02 1e+1 32 Oryza sativa Os04g0625400 9632.m05180 - - 2e+0 At4g30450 glycine-rich protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.65098.1.A1_at BJ261912 - - 1e+0 At3g59052 CPuORF18 (Conserved peptide upstream open reading frame 18) C.G. S.X.
0.04 7e+0 30 Vitis vinifera 1622623_at CF514619 hypothetical protein LOC100258799 - 1e+0 At1g64680 unknown protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.8685.1.A1_at CB351143 - - 5e+0 At5g27820 ribosomal protein L18 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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