Gene omics information

Query gene ID	PtpAffx.140097.1.A1_a_at
Gene name	arogenate/prephenate dehydratase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	84.9	PtpAffx.140097.1.A1_a_at	CV272774	arogenate/prephenate dehydratase	-	5e-13	At1g11790	ADT1 (arogenate dehydratase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.7456.1.S1_s_at	CK318652	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-79	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.6463.1.S1_at	CV235875	arogenate/prephenate dehydratase	-	9e-40	At2g27820	PD1 (PREPHENATE DEHYDRATASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.2560.1.S1_s_at	CV270621	hypothetical protein	-	1e-65	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.2560.3.S1_s_at	CK092469	hypothetical protein	-	2e-27	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.6462.1.S1_s_at	CF232785	3-phosphoshikimate 1-carboxyvinyltransferase	-	1e-63	At1g48860	3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	95.1	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	668	PtpAffx.140097.2.A1_at	CV228394	arogenate/prephenate dehydratase	-	5e-4	At1g11790	ADT1 (arogenate dehydratase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-1	36	PtpAffx.208334.1.S1_at	pmrna16569	arogenate/prephenate dehydratase	-	1e-32	At3g07630	ADT2 (arogenate dehydratase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.74807.1.S1_at	CV225788	-	-	5e-11	At5g49760	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.6463.1.S1_at	CV235875	arogenate/prephenate dehydratase	-	9e-40	At2g27820	PD1 (PREPHENATE DEHYDRATASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.5580.2.S1_s_at	CV243319	hypothetical protein	-	3e-21	At1g30460	CPSF30	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.5478.1.S1_at	CV246425	hypothetical protein	-	2e-77	At5g22360	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	34	PtpAffx.221846.1.S1_s_at	pmrna38930	-	-	5e-2	Atmg00550	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.217219.1.S1_at	pmrna32395	hypothetical protein	-	3e-3	At1g09790	COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)	C.G.	S.X.	Please selecteFP Browser (expression)
0.00	3e+0	34	PtpAffx.212556.1.S1_at	pmrna24605	hypothetical protein	-	1e-64	At5g24350	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	5e-13	75	Arabidopsis thaliana	At1g11790	837725	ADT1 (arogenate dehydratase 1)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-17	89	Glycine max	Gma.3352.1.S1_at	CA819497	-	-	3e-6	At1g11790	ADT1 (arogenate dehydratase 1)	C.G.	S.X.	Please select
0.02	9e-1	34	Hordeum vulgare	Contig20748_at	Contig20748	-	-	9e-1	At4g32030	unknown protein	C.G.	S.X.	Please select
0.03	2e-4	48	Oryza sativa	Os07g0512000	AK108133.1	-	Prephenate dehydratase domain containing protein	9e+0	At5g11450	oxygen-evolving complex-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	Ta.5260.1.S1_at	BJ272092	-	-	5e+0	At5g01740	-	C.G.	S.X.	Please select
0.37	4e-14	77	Vitis vinifera	1614844_at	CB005866	-	-	1e-3	At1g11790	ADT1 (arogenate dehydratase 1)	C.G.	S.X.	Please select
0.02	1e+1	30	Zea mays	ZmAffx.760.1.A1_at	AI734521	-	-	1e+1	At5g42591	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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