CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.139489.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.139489.1.S1_s_at BU880707 hypothetical protein - 1e+0 At1g53620 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.120315.1.S1_at CX171118 hypothetical protein - 5e-16 At3g30200 - S.X. H.G.
0.67 91.1 PtpAffx.126036.1.S1_at BP926823 - - 8e-1 At3g11020 DREB2B (DRE/CRT-BINDING PROTEIN 2B) S.X. H.G.
0.67 91.1 PtpAffx.55477.1.S1_s_at CX186924 hypothetical protein - 3e-51 At3g24430 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101) S.X. H.G.
0.55 82.2 PtpAffx.381.3.A1_a_at BP928153 - - 3e+0 At2g26120 glycine-rich protein S.X. H.G.
0.44 71.9 PtpAffx.22483.1.S1_s_at DN499741 hypothetical protein - 4e-38 At5g22800 EMB1030 (EMBRYO DEFECTIVE 1030) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.6 97.9 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.5 97.1 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.5 96.1 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4 95.9 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4 95.9 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3 95.8 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2 95.6 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1 95.5 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-90 333 Ptp.5036.1.S1_s_at CV234626 hypothetical protein - 7e-25 At5g12470 unknown protein C.G. S.X.
0.33 6e-56 218 PtpAffx.204856.1.S1_at pmrna9595 hypothetical protein - 6e-1 At3g52105 unknown protein C.G. S.X.
0.03 1e-1 38 PtpAffx.208231.1.S1_at pmrna16378 flavine-containing monoxygenase - 8e-22 At2g33230 flavin-containing monooxygenase, putative / FMO, putative C.G. S.X.
0.03 5e-1 36 PtpAffx.93628.1.A1_at BP930043 - - 1e+0 At1g80970 XH domain-containing protein C.G. S.X.
0.01 5e-1 36 PtpAffx.215380.1.S1_at pmrna29535 hypothetical protein - 2e-9 At3g17740 unknown protein C.G. S.X.
0.02 5e-1 36 Ptp.4684.1.S1_s_at CV233522 tubulin, beta chain - 0 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.03 2e+0 34 PtpAffx.213988.1.S1_at pmrna27255 hypothetical protein - 1e-6 At5g39280 ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23) C.G. S.X.
0.02 2e+0 34 PtpAffx.203088.1.S1_at pmrna6110 hypothetical protein - 2e-6 At1g72220 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 7e+0 32 PtpAffx.891.3.S1_a_at CF233972 tubulin, beta chain - 4e-153 At5g62700 TUB3 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At1g53620 841797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV - - - C.G. S.X.
0.10 3e-2 40 Glycine max GmaAffx.28586.1.S1_at CA782904 - - 1e-1 At1g22890 unknown protein C.G. S.X.
0.03 1e+1 30 Hordeum vulgare Contig6868_s_at Contig6868 - - 2e-6 At4g29400 unknown protein C.G. S.X.
0.04 6e-1 36 Oryza sativa OsAffx.12786.1.S1_at - - - 0 C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.27406.1.S1_at CA677217 - - 1e+0 At3g22120 CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN) C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1621303_at CD801160 hypothetical protein LOC100245359 - 2e-1 At1g77660 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.936.1.S1_at AI677620 - - 3e+0 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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