Gene omics information

Query gene ID	PtpAffx.13927.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.13927.1.S1_at	CX660204	hypothetical protein	-	2e-6	At5g19300	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.7770.1.A1_at	CA934754	-	-	4e+0	At1g58460	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.220631.1.S1_at	pmrna37041	hypothetical protein	-	7e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.224460.1.S1_x_at	pmrna43015	hypothetical protein	-	6e-1	At2g38780	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.225048.1.S1_at	pmrna44125	hypothetical protein	-	2e-1	At1g48980	oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.144822.1.S1_at	DN500556	-	-	1e+0	At5g66650	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
74.9	100.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
15.1	99.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.2	49.7	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.2	49.7	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.1	42.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.0	33.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	1e-175	617	PtpAffx.208797.1.S1_at	pmrna17439	hypothetical protein	-	2e-9	At5g19300	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	2e-100	367	Ptp.12.1.A1_at	CV257556	hypothetical protein	-	4e-11	At5g19300	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.17	3e-46	186	PtpAffx.225343.1.S1_at	pmrna44629	hypothetical protein	-	2e+0	At5g38950	germin-like protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-42	174	PtpAffx.225462.1.S1_at	pmrna44824	hypothetical protein	-	2e+0	At5g47420	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	1e-42	174	PtpAffx.225462.1.S1_x_at	pmrna44824	hypothetical protein	-	2e+0	At5g47420	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	3e-40	167	PtpAffx.225422.1.S1_at	pmrna44762	hypothetical protein	-	1e-1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	2e-35	151	PtpAffx.225901.1.S1_at	pmrna45548	hypothetical protein	-	1e-1	At5g36200	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	2e-35	151	PtpAffx.225332.1.S1_x_at	pmrna44598	hypothetical protein	-	1e-1	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	6e-26	119	PtpAffx.225293.1.S1_at	pmrna44536	hypothetical protein	-	5e-1	At1g63410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-6	54	Arabidopsis thaliana	At5g19300	832050	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-13	77	Glycine max	GmaAffx.88289.1.S1_at	BE473784	-	-	1e-3	At5g19300	-	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	baak26d07_at	baak26d07	-	-	5e-2	At4g22800	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	OsAffx.31801.4.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Triticum aestivum	TaAffx.129113.4.S1_at	CA710400	-	-	4e+0	At1g56385	-	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1618329_at	CF207990	-	-	8e-21	At1g51590	mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.2250.1.A1_at	BM378785	hypothetical protein LOC100279535	-	2e+0	At3g14250	protein binding / zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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