Gene omics information

Query gene ID	PtpAffx.139109.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.139109.1.S1_s_at	CX168297	hypothetical protein	-	5e-3	At3g03640	BGLU25 (BETA GLUCOSIDASE 25)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.5965.1.S1_at	CX169141	hypothetical protein	-	2e-4	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.34388.1.A1_at	BP932598	hypothetical protein	-	1e+0	At5g42965	nucleic acid binding / ribonuclease H	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.5965.1.S1_s_at	CX169141	hypothetical protein	-	2e-4	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.2750.1.S1_s_at	BU825949	hypothetical protein	-	1e-3	At4g36470	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.5519.1.S1_s_at	BU824008	hypothetical protein	-	5e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.1	100.0	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
16.2	99.6	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.5	98.3	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.3	81.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.9	74.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	1e-155	549	Ptp.5965.1.S1_s_at	CX169141	hypothetical protein	-	2e-4	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	C.G.	S.X.	Please selecteFP Browser (expression)
0.67	1e-155	549	Ptp.5965.1.S1_at	CX169141	hypothetical protein	-	2e-4	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	2e-6	54	PtpAffx.203906.1.S1_at	pmrna7716	hypothetical protein	-	1e-5	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e-6	52	PtpAffx.29632.1.S1_at	CX654220	-	-	2e-3	At3g18080	BGLU44 (B-S GLUCOSIDASE 44)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	7e-3	42	PtpAffx.200540.1.S1_s_at	pmrna1075	hypothetical protein	-	2e-6	At5g54570	BGLU41 (BETA GLUCOSIDASE 41)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	7e-3	42	PtpAffx.200539.1.S1_at	pmrna1074	hypothetical protein	-	1e-5	At3g09260	PYK10	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	3e-2	40	PtpAffx.92049.1.S1_s_at	DN494710	hypothetical protein	-	3e-7	At5g54570	BGLU41 (BETA GLUCOSIDASE 41)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.202245.1.S1_at	pmrna4500	hypothetical protein	-	3e-15	At2g46270	GBF3 (G-BOX BINDING FACTOR 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.200551.1.S1_at	pmrna1094	hypothetical protein	-	5e-8	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-3	42	Arabidopsis thaliana	At3g03640	821201	BGLU25 (BETA GLUCOSIDASE 25)	Encodes beta-glucosidase (GLUC).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	7e-3	42	Glycine max	GmaAffx.92510.1.S1_at	CF808235	-	-	3e-7	At1g51490	BGLU36 (BETA GLUCOSIDASE 36)	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig7602_s_at	Contig7602	-	-	2e+0	At2g38780	unknown protein	C.G.	S.X.	Please select
0.07	7e-4	46	Oryza sativa	Os04g0474800	AK100820.1	-	Glycoside hydrolase, family 1 protein	3e-3	At5g42260	BGLU12 (BETA GLUCOSIDASE 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Triticum aestivum	TaAffx.38244.1.S1_at	BJ243672	-	-	8e-4	At3g56040	UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)	C.G.	S.X.	Please select
0.05	4e-4	44	Vitis vinifera	1622281_at	CD715637	hypothetical LOC100250160	-	2e-11	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17447.1.A1_at	CK348160	-	-	3e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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