Gene omics information

Query gene ID	PtpAffx.138996.1.S1_at
Gene name	nbs-lrr resistance protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	83.9	PtpAffx.138996.1.S1_at	CX182529	nbs-lrr resistance protein	-	9e-15	At5g04720	ADR1-L2 (ADR1-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.12738.1.S1_at	CV266359	-	-	8e-4	At1g33950	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.145807.1.S1_at	CX184416	ethylene receptor 1	-	1e-31	At2g40940	ERS1 (ETHYLENE RESPONSE SENSOR 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.211636.1.S1_at	pmrna22804	SAUR family protein	-	2e-11	At2g46690	auxin-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.116026.1.S1_at	CV253027	ethylene receptor 1	-	3e-36	At2g40940	ERS1 (ETHYLENE RESPONSE SENSOR 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.211437.1.S1_at	pmrna22410	hypothetical protein	-	1e-11	At5g58680	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	99.2	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
10.5	99.0	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
10.2	99.0	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
9.2	98.8	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
8.5	98.6	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.8	98.4	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.0	97.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	0	670	Ptp.4795.1.S1_s_at	CA925817	nbs-lrr resistance protein	-	2e-3	At5g04720	ADR1-L2 (ADR1-like 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	0	670	Ptp.4795.1.S1_at	CA925817	nbs-lrr resistance protein	-	2e-3	At5g04720	ADR1-L2 (ADR1-like 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.34	5e-128	458	Ptp.6111.1.S1_at	CV264294	nbs-lrr resistance protein	-	4e-5	At4g33300	ADR1-L1 (ADR1-like 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	6e-29	129	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.224870.1.S1_at	pmrna43761	cc-nbs-lrr resistance protein	-	1e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.221841.1.S1_x_at	pmrna38924	cc-nbs-lrr resistance protein	-	4e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.221843.1.S1_at	pmrna38926	cc-nbs-lrr resistance protein	-	4e-1	At5g55850	NOI	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.221841.1.S1_at	pmrna38924	cc-nbs-lrr resistance protein	-	4e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-2	40	PtpAffx.221843.1.S1_x_at	pmrna38926	cc-nbs-lrr resistance protein	-	4e-1	At5g55850	NOI	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	9e-15	81	Arabidopsis thaliana	At5g04720	830350	ADR1-L2 (ADR1-like 2)	F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	7e-4	46	Glycine max	GmaAffx.90517.1.S1_at	CF806242	-	-	8e-2	At5g04720	ADR1-L2 (ADR1-like 2)	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	Contig24926_at	Contig24926	-	-	3e-1	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	C.G.	S.X.	Please select
0.12	1e-2	42	Oryza sativa	Os12g0586000	AK119516.1	-	Disease resistance protein ADR1 (Activated diseaseresistance protein 1)	1e+0	At3g07750	3' exoribonuclease family domain 1-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-5	50	Triticum aestivum	TaAffx.8993.1.S1_at	CA616697	-	-	5e-3	At4g33300	ADR1-L1 (ADR1-like 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1616027_at	AY427180.1	-	-	3e-4	At4g16990	RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	ZmAffx.1530.1.S1_at	40794996-12	-	-	6e-1	At1g34070	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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