Gene omics information

Query gene ID	PtpAffx.138176.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.138176.1.S1_s_at	BU883966	hypothetical protein	-	7e-5	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.39908.3.S1_a_at	CX176310	hypothetical protein	-	1e-71	At1g10430	PP2A-2	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.200567.1.S1_at	pmrna1120	hypothetical protein	-	2e-39	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.7424.1.S1_at	BU861469	hypothetical protein	-	7e-52	At1g12840	DET3 (DE-ETIOLATED 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	94.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	5e-170	597	Ptp.7551.1.S1_at	CX184844	hypothetical protein	-	7e-21	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	5e-161	567	PtpAffx.217829.1.S1_at	pmrna33248	hypothetical protein	-	5e-23	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	3e-8	59	Ptp.1386.1.A1_at	CK092893	hypothetical protein	-	1e-19	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-2	40	PtpAffx.215557.1.S1_at	pmrna29820	hypothetical protein	-	7e-4	At1g21670	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	38	PtpAffx.218667.1.S1_at	pmrna34370	hypothetical protein	-	5e-1	At1g76450	oxygen-evolving complex-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.202155.1.S1_at	pmrna4310	hypothetical protein	-	5e-1	At4g22740	glycine-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	34	PtpAffx.58636.1.S1_at	CK096620	SET domain protein	-	2e-44	At4g02020	SWN (SWINGER)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.217269.1.S1_s_at	pmrna32461	hypothetical protein	-	1e-49	At4g04940	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.215799.1.S1_at	pmrna30193	-	-	8e-1	At5g27460	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-5	48	Arabidopsis thaliana	At2g17720	816281	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-5	50	Glycine max	Gma.15066.2.S1_at	BG044740	-	-	1e-38	At1g20270	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.06	9e-6	50	Hordeum vulgare	Contig10492_at	Contig10492	-	-	8e-31	At1g20270	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os12g0468100	9640.m02715	-	-	5e+0	At4g40060	ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Triticum aestivum	TaAffx.114823.1.S1_at	CA732761	-	-	4e+0	At4g07825	unknown protein	C.G.	S.X.	Please select
0.12	4e-16	83	Vitis vinifera	1611011_at	CB977487	hypothetical protein LOC100252286	-	3e-43	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.1587.1.A1_at	AY108487.1	hypothetical protein LOC100277083	-	4e+0	At1g31875	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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