CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.13792.2.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.13792.2.S1_at CV283738 hypothetical protein - 7e-14 At4g10610 CID12 S.X. H.G.
0.67 91.1 PtpAffx.11623.1.A1_at CV260515 hypothetical protein - 8e-25 At5g09850 transcription elongation factor-related S.X. H.G.
0.53 80.5 PtpAffx.20260.2.S1_a_at CV257316 hypothetical protein - 1e-3 At4g22190 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.214482.1.S1_at pmrna28166 hypothetical protein - 4e-21 At4g31000 calmodulin-binding protein S.X. H.G.
0.35 59.7 PtpAffx.32386.1.A1_a_at CV245577 hypothetical protein - 8e-3 At1g01780 LIM domain-containing protein S.X. H.G.
0.23 40.5 Ptp.3673.1.S1_s_at CK096543 hypothetical protein - 6e-1 At4g00355 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.7 98.6 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.1 96.8 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 841 PtpAffx.13792.3.S1_at BU877405 - - 1e-20 At4g10610 CID12 C.G. S.X.
0.62 0 841 PtpAffx.13792.3.S1_a_at BU877405 - - 1e-20 At4g10610 CID12 C.G. S.X.
0.58 0 771 PtpAffx.13792.1.S1_at CV267483 hypothetical protein - 4e-20 At3g49390 CID10 C.G. S.X.
0.26 2e-48 194 PtpAffx.25555.1.A1_at CV244638 hypothetical protein - 2e-66 At1g32790 RNA-binding protein, putative C.G. S.X.
0.01 8e-2 40 PtpAffx.15002.2.S1_at AJ774575 hypothetical protein - 4e-30 At1g31930 XLG3 (extra-large GTP-binding protein 3) C.G. S.X.
0.01 3e-1 38 PtpAffx.5219.3.S1_at CV264590 hypothetical protein - 5e-15 At1g79720 aspartyl protease family protein C.G. S.X.
0.02 3e-1 38 PtpAffx.31140.1.A1_at CV245788 hypothetical protein - 6e-66 At3g14450 CID9 (CTC-Interacting Domain 9) C.G. S.X.
0.01 3e-1 38 Ptp.7339.1.S1_at DN493231 hypothetical protein - 6e-34 At5g07050 - C.G. S.X.
0.07 3e-1 38 Ptp.4171.1.A1_at CV227340 hypothetical protein - 1e-39 At3g14450 CID9 (CTC-Interacting Domain 9) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 7e-14 79 Arabidopsis thaliana At4g10610 826653 CID12 RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif). - - - C.G. S.X.
0.23 1e-53 212 Glycine max GmaAffx.67622.1.S1_at BU548942 - - 9e-19 At1g53650 CID8 (CTC-INTERACTING DOMAIN 8) C.G. S.X.
0.19 8e-15 81 Hordeum vulgare Contig9150_at Contig9150 - - 7e-37 At1g32790 RNA-binding protein, putative C.G. S.X.
0.21 7e-37 157 Oryza sativa Os08g0116400 AK103042.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-45 At1g32790 RNA-binding protein, putative C.G. S.X.
0.14 2e-17 91 Triticum aestivum Ta.3714.1.S1_x_at BE427137 - - 2e-35 At1g32790 RNA-binding protein, putative C.G. S.X.
0.11 2e-20 99 Vitis vinifera 1613596_at CB915257 hypothetical protein LOC100261591 - 3e-29 At1g32790 RNA-binding protein, putative C.G. S.X.
0.04 2e-6 54 Zea mays Zm.1213.1.S1_at BG842292 CID11 - 3e-15 At4g10610 CID12 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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