Gene omics information

Query gene ID	PtpAffx.136498.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	88.4	PtpAffx.136498.1.S1_at	CF230021	hypothetical protein	-	6e-3	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.148399.1.S1_at	CF234711	hypothetical protein	-	2e-2	At3g25545	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.200972.1.S1_x_at	pmrna1900	hypothetical protein	-	4e-9	At5g40490	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.4561.1.S1_s_at	BU826272	hypothetical protein	-	6e-9	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.102441.1.S1_s_at	CV131778	-	-	1e+0	At5g55610	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4606.1.S1_at	BP922769	hypothetical protein	-	1e-40	At4g28390	AAC3 (ADP/ATP CARRIER 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.249.468.A1_at	CF119463	hypothetical protein	-	3e-97	At1g56410	ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.22.2.S1_at	CV256577	hypothetical protein	-	6e-12	At3g08550	KOB1 (KOBITO)	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.218860.1.S1_at	pmrna34602	hypothetical protein	-	1e-6	At1g64880	ribosomal protein S5 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.91803.1.S1_at	DN500898	hypothetical protein	-	2e-18	At4g36195	serine carboxypeptidase S28 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	98.1	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.0	96.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	PtpAffx.225522.1.S1_at	pmrna44928	cc-nbs-lrr resistance protein	-	4e-1	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.219441.1.S1_x_at	pmrna35362	cc-nbs-lrr resistance protein	-	1e-1	At5g45210	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.219441.1.S1_at	pmrna35362	cc-nbs-lrr resistance protein	-	1e-1	At5g45210	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.219444.1.S1_at	pmrna35365	cc-nbs-lrr resistance protein	-	2e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.219444.1.S1_x_at	pmrna35365	cc-nbs-lrr resistance protein	-	2e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.219219.1.S1_at	pmrna35076	hypothetical protein	-	5e-1	At1g48630	RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.218977.1.S1_at	pmrna34749	hypothetical protein	-	7e-1	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.218977.1.S1_x_at	pmrna34749	hypothetical protein	-	7e-1	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.217801.1.S1_at	pmrna33209	hypothetical protein	-	6e-1	At5g54240	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-3	42	Arabidopsis thaliana	At1g52260	841656	ATPDIL1-5 (PDI-LIKE 1-5)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-9	63	Glycine max	GmaAffx.88516.1.S1_at	BG046959	-	-	9e-3	At3g16110	ATPDIL1-6 (PDI-LIKE 1-6)	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig4670_s_at	Contig4670	-	-	4e+0	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	OsAffx.16777.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	Ta.15060.1.S1_at	CA688344	-	-	2e+0	At5g27980	seed maturation family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621083_at	CF511394	-	-	2e-1	At3g63088	RTFL14 (ROTUNDIFOLIA LIKE 14)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.16890.1.A1_at	BM381222	hypothetical protein LOC100273286	-	2e+0	At2g41440	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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