CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.13609.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.13609.1.S1_at CX167472 hypothetical protein - 2e-11 At1g30440 phototropic-responsive NPH3 family protein S.X. H.G.
0.67 91.1 PtpAffx.11483.2.A1_at CK106946 hypothetical protein - 7e-2 At2g21790 RNR1 (RIBONUCLEOTIDE REDUCTASE 1) S.X. H.G.
0.60 86.0 Ptp.2544.1.A1_at CK087698 hypothetical protein - 1e-12 At3g24660 TMKL1 (transmembrane kinase-like 1) S.X. H.G.
0.50 78.6 Ptp.6684.1.S1_at DN484836 hypothetical protein - 1e+0 At5g63700 zinc finger (C3HC4 type RING finger) family protein S.X. H.G.
0.50 78.6 PtpAffx.106138.1.S1_at BU889364 - - 2e+0 At4g17585 unknown protein S.X. H.G.
0.33 57.5 Ptp.478.1.A1_at CK087253 hypothetical protein - 4e-1 At4g25410 DNA binding / transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.4 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.9 98.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.0 97.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.5 97.1 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 0 761 Ptp.2053.1.A1_at DN484963 hypothetical protein - 7e-29 At1g30440 phototropic-responsive NPH3 family protein C.G. S.X.
0.38 8e-55 214 PtpAffx.44531.1.A1_at CV228707 hypothetical protein - 3e+0 At4g21902 unknown protein C.G. S.X.
0.09 5e-13 75 PtpAffx.213505.1.S1_at pmrna26401 hypothetical protein - 2e-35 At5g03250 phototropic-responsive NPH3 family protein C.G. S.X.
0.04 2e-3 44 PtpAffx.207637.1.S1_at pmrna15138 hypothetical protein - 3e-22 At5g03250 phototropic-responsive NPH3 family protein C.G. S.X.
0.04 3e-2 40 PtpAffx.209406.1.S1_at pmrna18631 hypothetical protein - 3e-13 At5g03250 phototropic-responsive NPH3 family protein C.G. S.X.
0.08 3e-2 40 PtpAffx.139528.1.S1_at CF230512 hypothetical protein - 6e-9 At5g67385 protein binding / signal transducer C.G. S.X.
0.03 1e-1 38 PtpAffx.54366.1.A1_at CK087841 hypothetical protein - 7e-3 At4g31820 ENP (ENHANCER OF PINOID) C.G. S.X.
0.03 1e-1 38 PtpAffx.12306.1.S1_a_at CK089149 hypothetical protein - 4e+0 At1g53850 PAE1 C.G. S.X.
0.03 4e-1 36 PtpAffx.59892.1.S1_at CK111920 hypothetical protein - 6e+0 At5g13825 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-11 69 Arabidopsis thaliana At1g30440 839923 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PM - - - C.G. S.X.
0.45 2e-62 240 Glycine max GmaAffx.65064.1.S1_at CA800739 - - 7e-6 At5g03250 phototropic-responsive NPH3 family protein C.G. S.X.
0.03 1e-1 36 Hordeum vulgare HT05K20u_at HT05K20u - - 4e+0 At5g13340 unknown protein C.G. S.X.
0.09 4e-5 50 Oryza sativa Os.17133.1.S1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.23666.1.A1_at X04532.1 seed storage protein (154AA) - 3e-1 At4g15260 UDP-glucoronosyl/UDP-glucosyl transferase family protein C.G. S.X.
0.08 2e-2 38 Vitis vinifera 1613500_at CA809250 - - 2e-2 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
0.13 2e-3 42 Zea mays Zm.5126.1.A1_at CK145113 - - 3e-2 At5g66560 phototropic-responsive NPH3 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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