CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.135882.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.135882.1.A1_at CV281275 hypothetical protein - 1e-7 At1g78420 protein binding / zinc ion binding S.X. H.G.
0.80 96.0 Ptp.7787.1.S1_s_at DN499212 - - 4e+0 At2g05642 - S.X. H.G.
0.46 73.7 Ptp.2558.1.S1_at CK096344 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.35 59.7 Ptp.5593.1.S1_at DN495608 hypothetical protein - 7e-15 At4g26240 unknown protein S.X. H.G.
0.33 57.5 PtpAffx.12253.1.A1_at CV225881 hypothetical protein - 3e+0 At4g32960 unknown protein S.X. H.G.
0.29 50.5 PtpAffx.121458.1.A1_s_at CV239175 hypothetical protein - 3e-14 At3g20650 mRNA capping enzyme family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.6 84.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-57 222 PtpAffx.209855.1.S1_at pmrna19426 hypothetical protein - 1e-35 At1g78420 protein binding / zinc ion binding C.G. S.X.
0.03 2e-1 38 PtpAffx.97406.1.S1_at CF235824 hypothetical protein - 8e-2 At4g00270 DNA-binding storekeeper protein-related C.G. S.X.
0.02 6e-1 36 PtpAffx.207782.1.S1_at pmrna15473 - - 7e-22 At3g11040 glycosyl hydrolase family 85 protein C.G. S.X.
0.01 6e-1 36 Ptp.2714.1.S1_at CV282538 ABC transporter family protein - 6e-49 At3g54540 ATGCN4 C.G. S.X.
0.01 3e+0 34 PtpAffx.54125.1.A1_s_at CK095265 cytochrome P450 /// cytochrome P450 /// cytochrome P450 - 3e+0 At5g57260 CYP71B10 C.G. S.X.
0.02 3e+0 34 PtpAffx.32354.2.S1_s_at CN524201 hypothetical protein - 2e-34 At2g19900 ATNADP-ME1 (NADP-malic enzyme 1) C.G. S.X.
0.02 3e+0 34 PtpAffx.2243.3.A1_at CV273043 sucrose proton symporter /// sucrose proton symporter /// sucrose proton symporter - 6e-22 At5g46020 unknown protein C.G. S.X.
0.04 3e+0 34 PtpAffx.217696.1.S1_s_at pmrna33059 hypothetical protein - 6e-3 At1g17330 metal-dependent phosphohydrolase HD domain-containing protein-related C.G. S.X.
0.02 3e+0 34 PtpAffx.217122.1.S1_at pmrna32265 cytochrome P450 - 1e+0 At1g12530 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-7 57 Arabidopsis thaliana At1g78420 844178 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;FPMO - - - C.G. S.X.
0.04 2e-10 67 Glycine max Gma.8275.1.S1_at AW831292 - - 4e-7 At1g78420 protein binding / zinc ion binding C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HM11M18r_at HM11M18r - - 9e-1 At2g27160 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.6178.1.S1_at - - - 0 C.G. S.X.
0.04 1e-7 57 Triticum aestivum Ta.6439.3.A1_a_at CA600879 - - 4e+0 At4g11870 unknown protein C.G. S.X.
0.08 2e-22 105 Vitis vinifera 1607819_at CB973783 hypothetical protein LOC100256555 - 1e-9 At1g78420 protein binding / zinc ion binding C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.746.1.A1_at AI745786 - - 8e-1 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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