CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.135825.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 97.0 PtpAffx.135825.1.S1_at CF936294 hypothetical protein - 8e-34 At3g46180 UTR5 (UDP-GALACTOSE TRANSPORTER 5) S.X. H.G.
0.50 78.6 PtpAffx.131812.1.S1_at DN501570 hypothetical protein - 3e-4 At3g25910 zinc ion binding S.X. H.G.
0.50 78.6 Ptp.2014.1.S1_s_at CV258759 hypothetical protein - 2e-50 At4g29490 aminopeptidase/ manganese ion binding S.X. H.G.
0.43 69.7 Ptp.3469.1.S1_s_at CK100709 hypothetical protein - 3e-24 At5g18640 lipase class 3 family protein S.X. H.G.
0.40 67.0 Ptp.3625.1.A1_at CV267089 hypothetical protein - 2e-12 At3g07560 PEX13 (PEROXIN 13) S.X. H.G.
0.36 61.6 PtpAffx.99107.3.A1_s_at CV240653 hypothetical protein - 6e-64 At4g19640 ARA7 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 94.7 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0 92.9 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.0 92.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 6e-60 232 PtpAffx.16409.1.A1_at DN495749 hypothetical protein - 6e-6 At5g59740 UDP-galactose/UDP-glucose transporter-related C.G. S.X.
0.02 2e-1 38 Ptp.731.1.A1_at CK088341 hypothetical protein - 9e-27 At5g35700 FIM2 (FIMBRIN-LIKE PROTEIN 2) C.G. S.X.
0.01 8e-1 36 PtpAffx.201647.1.S1_at pmrna3265 hypothetical protein - 3e-18 At1g75310 AUL1 C.G. S.X.
0.02 3e+0 34 PtpAffx.98662.1.S1_at CV226285 hypothetical protein - 2e+0 At5g22520 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.86136.1.S1_at CV245562 hypothetical protein - 5e-10 At1g31940 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.56469.1.S1_at CV241388 hypothetical protein - 1e-2 At3g29400 ATEXO70E1 (exocyst subunit EXO70 family protein E1) C.G. S.X.
0.02 3e+0 34 PtpAffx.44086.1.A1_at CV245626 - - 1e+0 At1g22680 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.36675.1.A1_at CA930341 hypothetical protein - 4e-8 At3g59670 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.225677.1.S1_at pmrna45203 MIKC mads-box transcription factor - 5e-10 At3g54340 AP3 (APETALA 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 8e-34 145 Arabidopsis thaliana At3g46180 823761 UTR5 (UDP-GALACTOSE TRANSPORTER 5) F:galactose transmembrane transporter activity;P:unknown;C:unknown;MFPOB - - - C.G. S.X.
0.25 1e-20 101 Glycine max GmaAffx.77860.1.S1_at BI973641 - - 8e-35 At3g46180 UTR5 (UDP-GALACTOSE TRANSPORTER 5) C.G. S.X.
0.12 9e-29 127 Hordeum vulgare Contig9750_at Contig9750 - - 3e-10 At5g59740 UDP-galactose/UDP-glucose transporter-related C.G. S.X.
0.17 4e-22 107 Oryza sativa Os05g0115700 AK070819.1 - Conserved hypothetical protein 1e-18 At5g59740 UDP-galactose/UDP-glucose transporter-related C.G. S.X.
0.02 6e-1 36 Triticum aestivum Ta.26624.1.A1_at CD491395 - - 2e-5 At1g03030 phosphoribulokinase/uridine kinase family protein C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1613905_at CF210463 hypothetical protein LOC100254141 - 3e-13 At5g08160 ATPK3 C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9971.1.A1_at BM338027 hypothetical protein LOC100192482 - 1e+0 At1g33760 AP2 domain-containing transcription factor, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage