Gene omics information

Query gene ID	PtpAffx.135690.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	93.8	PtpAffx.135690.1.S1_at	CK105850	hypothetical protein	-	1e+0	At4g18940	cyclic phosphodiesterase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.212442.1.S1_at	pmrna24380	hypothetical protein	-	6e-1	At1g75350	emb2184 (embryo defective 2184)	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.121094.1.A1_at	CV254794	-	-	8e-1	At5g41390	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.9143.2.A1_at	CV241187	hypothetical protein	-	1e-1	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.211820.1.S1_at	pmrna23192	hypothetical protein	-	2e-42	At2g42700	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.26642.2.A1_a_at	CV250411	hypothetical protein	-	1e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.204770.1.S1_at	pmrna9393	hypothetical protein	-	1e-1	At3g52070	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.208767.1.S1_at	pmrna17380	hypothetical protein	-	1e+0	At5g26610	D111/G-patch domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.3	93.7	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-18	93	PtpAffx.212679.1.S1_at	pmrna24796	hypothetical protein	-	2e+0	At5g39620	AtRABG1 (Arabidopsis Rab GTPase homolog G1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-18	93	PtpAffx.212676.1.S1_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-18	93	PtpAffx.212676.1.S1_s_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	36	PtpAffx.212677.1.S1_at	pmrna24794	hypothetical protein	-	1e+0	At5g39620	AtRABG1 (Arabidopsis Rab GTPase homolog G1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.139716.1.S1_at	BU838006	hypothetical protein	-	1e-4	At1g44170	ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e+0	34	PtpAffx.224210.1.S1_s_at	pmrna42545	hypothetical protein	-	3e-9	At1g26380	FAD-binding domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.214096.1.S1_x_at	pmrna27442	hypothetical protein	-	8e-1	At4g28290	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.213753.1.S1_s_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.213753.1.S1_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g18940	827629	cyclic phosphodiesterase, putative	F:cyclic-nucleotide phosphodiesterase activity, catalytic activity;P:RNA metabolic process;C:intracellular;OPBAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.14037.1.A1_at	BU548988	-	-	3e-7	At5g41770	crooked neck protein, putative / cell cycle protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	S0001100180A07F1_at	S0001100180A07F1	-	-	1e-2	At3g44110	ATJ3	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	Os07g0506800	9635.m03179	-	-	2e-1	At3g50685	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Triticum aestivum	Ta.10857.1.A1_at	BQ166702	-	-	2e-1	At4g24350	phosphorylase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1609264_at	CF405537	hypothetical protein LOC100246183	-	4e+0	At4g02250	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.1142.1.A1_at	CK827212	Hypothetical protein LOC100216781	-	4e+0	At5g56520	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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