CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.135514.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.135514.1.S1_at DN498152 hypothetical protein - 1e-7 At5g07910 leucine-rich repeat family protein S.X. H.G.
0.55 82.2 PtpAffx.93050.1.S1_at DN500932 hypothetical protein - 1e-7 At3g48070 protein binding / zinc ion binding S.X. H.G.
0.43 69.7 Ptp.5383.1.S1_at AJ768686 hypothetical protein - 1e-32 At5g22000 RHF2A (RING-H2 GROUP F2A) S.X. H.G.
0.40 67.0 PtpAffx.217198.1.S1_at pmrna32362 - - 1e-99 At5g22950 VPS24.1 S.X. H.G.
0.40 67.0 PtpAffx.158765.2.S1_s_at CF118958 hypothetical protein - 8e-35 At3g52950 CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein S.X. H.G.
0.24 41.8 PtpAffx.1404.2.A1_a_at CV225922 hypothetical protein - 6e-5 At3g24315 AtSec20 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 96.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-4 48 PtpAffx.200041.1.S1_s_at pmrna70 hypothetical protein - 6e-1 At2g14750 APK (APS KINASE) C.G. S.X.
0.01 6e-1 36 PtpAffx.224937.1.S1_at pmrna43872 hypothetical protein - 9e-1 At1g63230 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 6e-1 36 PtpAffx.224216.1.S1_at pmrna42558 hypothetical protein - 5e-5 At5g44390 FAD-binding domain-containing protein C.G. S.X.
0.01 6e-1 36 PtpAffx.216305.1.S1_at pmrna30997 cc-nbs-lrr resistance protein - 4e-1 At4g33740 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.214557.1.S1_at pmrna28281 hypothetical protein - 4e-2 At5g65910 BSD domain-containing protein C.G. S.X.
0.01 6e-1 36 PtpAffx.208682.1.S1_at pmrna17220 hypothetical protein - 8e-1 At2g26720 plastocyanin-like domain-containing protein / mavicyanin, putative C.G. S.X.
0.02 6e-1 36 PtpAffx.204922.1.S1_at pmrna9736 hypothetical protein - 4e-12 At3g47000 glycosyl hydrolase family 3 protein C.G. S.X.
0.03 6e-1 36 PtpAffx.129002.1.S1_s_at CV241083 hypothetical protein - 5e+0 At3g22880 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) C.G. S.X.
0.03 6e-1 36 PtpAffx.129002.1.S1_at CV241083 hypothetical protein - 5e+0 At3g22880 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-7 57 Arabidopsis thaliana At5g07910 830685 leucine-rich repeat family protein F:protein binding;P:N-terminal protein myristoylation;C:plasma membrane;MPBOFA - - - C.G. S.X.
0.18 2e-3 44 Glycine max GmaAffx.71484.1.S1_at BM094052 - - 3e-7 At5g07910 leucine-rich repeat family protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig24928_at Contig24928 - - 1e+0 At3g02160 DNA binding C.G. S.X.
0.04 3e-3 44 Oryza sativa Os03g0212200 AK069951.1 - Leucine-rich repeat, typical subtype containingprotein 1e-1 At1g13550 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.28524.1.A1_at BJ270925 beta-1,3-glucanase - 9e-1 At3g54620 BZIP25 (BASIC LEUCINE ZIPPER 25) C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1618654_at CF513468 hypothetical protein LOC100259649 - 9e-1 At4g04614 unknown protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.16513.11.A1_a_at AI737282 hypothetical protein LOC100217303 - 3e+0 At1g01230 ORMDL family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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