Gene omics information

Query gene ID PtpAffx.135514.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6086.0PtpAffx.135514.1.S1_atDN498152hypothetical protein-1e-7At5g07910leucine-rich repeat family proteinS.X.H.G.
0.5582.2PtpAffx.93050.1.S1_atDN500932hypothetical protein-1e-7At3g48070protein binding / zinc ion bindingS.X.H.G.
0.4369.7Ptp.5383.1.S1_atAJ768686hypothetical protein-1e-32At5g22000RHF2A (RING-H2 GROUP F2A)S.X.H.G.
0.4067.0PtpAffx.217198.1.S1_atpmrna32362--1e-99At5g22950VPS24.1S.X.H.G.
0.4067.0PtpAffx.158765.2.S1_s_atCF118958hypothetical protein-8e-35At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinS.X.H.G.
0.2441.8PtpAffx.1404.2.A1_a_atCV225922hypothetical protein-6e-5At3g24315AtSec20S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.896.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
3.894.9GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue series
3.594.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue series
3.594.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.494.0GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.393.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue series
3.092.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.590.9GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-448PtpAffx.200041.1.S1_s_atpmrna70hypothetical protein-6e-1At2g14750APK (APS KINASE)C.G.S.X.
0.016e-136PtpAffx.224937.1.S1_atpmrna43872hypothetical protein-9e-1At1g63230pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.026e-136PtpAffx.224216.1.S1_atpmrna42558hypothetical protein-5e-5At5g44390FAD-binding domain-containing proteinC.G.S.X.
0.016e-136PtpAffx.216305.1.S1_atpmrna30997cc-nbs-lrr resistance protein-4e-1At4g33740unknown proteinC.G.S.X.
0.026e-136PtpAffx.214557.1.S1_atpmrna28281hypothetical protein-4e-2At5g65910BSD domain-containing proteinC.G.S.X.
0.016e-136PtpAffx.208682.1.S1_atpmrna17220hypothetical protein-8e-1At2g26720plastocyanin-like domain-containing protein / mavicyanin, putativeC.G.S.X.
0.026e-136PtpAffx.204922.1.S1_atpmrna9736hypothetical protein-4e-12At3g47000glycosyl hydrolase family 3 proteinC.G.S.X.
0.036e-136PtpAffx.129002.1.S1_s_atCV241083hypothetical protein-5e+0At3g22880DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)C.G.S.X.
0.036e-136PtpAffx.129002.1.S1_atCV241083hypothetical protein-5e+0At3g22880DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.261e-757Arabidopsis thalianaAt5g07910830685leucine-rich repeat family proteinF:protein binding;P:N-terminal protein myristoylation;C:plasma membrane;MPBOFA---C.G.S.X.
0.182e-344Glycine maxGmaAffx.71484.1.S1_atBM094052--3e-7At5g07910leucine-rich repeat family proteinC.G.S.X.
0.033e+032Hordeum vulgareContig24928_atContig24928--1e+0At3g02160DNA bindingC.G.S.X.
0.043e-344Oryza sativaOs03g0212200AK069951.1-Leucine-rich repeat, typical subtype containingprotein1e-1At1g13550unknown proteinC.G.S.X.
0.032e+034Triticum aestivumTa.28524.1.A1_atBJ270925beta-1,3-glucanase-9e-1At3g54620BZIP25 (BASIC LEUCINE ZIPPER 25)C.G.S.X.
0.035e-134Vitis vinifera1618654_atCF513468hypothetical protein LOC100259649-9e-1At4g04614unknown proteinC.G.S.X.
0.032e-136Zea maysZm.16513.11.A1_a_atAI737282hypothetical protein LOC100217303-3e+0At1g01230ORMDL family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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