CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.134857.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.134857.1.S1_at CX185540 hypothetical protein - 2e-43 At2g32080 PUR ALPHA-1 S.X. H.G.
0.91 99.2 PtpAffx.156707.1.S1_s_at BU873655 hypothetical protein - 4e-4 At2g03110 RNA binding / nucleic acid binding S.X. H.G.
0.73 93.6 PtpAffx.134857.2.S1_at CN523812 hypothetical protein - 2e-24 At2g32080 PUR ALPHA-1 S.X. H.G.
0.56 83.9 PtpAffx.61544.1.A1_at CA931045 hypothetical protein - 4e-19 At3g59380 FTA (FARNESYLTRANSFERASE A) S.X. H.G.
0.55 82.2 PtpAffx.496.3.S1_at AJ775413 hypothetical protein - 3e-4 At5g56680 SYNC1 S.X. H.G.
0.43 69.7 PtpAffx.3977.1.S1_s_at CA821307 hypothetical protein - 2e-18 At5g52040 ATRSP41 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.2 95.6 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6 94.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1 93.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1447 PtpAffx.134857.1.S1_a_at CX185540 hypothetical protein - 2e-43 At2g32080 PUR ALPHA-1 C.G. S.X.
0.62 0 656 PtpAffx.134857.2.S1_at CN523812 hypothetical protein - 2e-24 At2g32080 PUR ALPHA-1 C.G. S.X.
0.19 3e-89 329 Ptp.2489.1.A1_at CV228230 hypothetical protein - 2e-22 At2g32080 PUR ALPHA-1 C.G. S.X.
0.05 2e-4 48 PtpAffx.159533.1.A1_at CV269395 hypothetical protein - 2e-15 At2g32080 PUR ALPHA-1 C.G. S.X.
0.03 1e-1 38 PtpAffx.8045.1.S1_s_at CX174040 - - 2e-1 At5g02750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e-1 38 PtpAffx.5907.1.A1_at CV229873 hypothetical protein - 3e-58 At5g03540 ATEXO70A1 (exocyst subunit EXO70 family protein A1) C.G. S.X.
0.03 1e-1 38 Ptp.2428.1.S1_at CK093414 - - 3e-32 At5g65930 ZWI (ZWICHEL) C.G. S.X.
0.03 6e-1 36 PtpAffx.220060.1.S1_s_at pmrna36341 hypothetical protein - 1e-17 At1g32360 zinc finger (CCCH-type) family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.653.14.A1_s_at CX173034 hypothetical protein - 3e-4 At1g70470 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-43 176 Arabidopsis thaliana At2g32080 817768 PUR ALPHA-1 similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication - - - C.G. S.X.
0.51 6e-78 291 Glycine max GmaAffx.93138.1.S1_s_at CF808863 - - 2e-27 At2g32080 PUR ALPHA-1 C.G. S.X.
0.17 3e-6 52 Hordeum vulgare Contig7564_at Contig7564 - - 4e-5 At2g32080 PUR ALPHA-1 C.G. S.X.
0.16 4e-9 63 Oryza sativa Os01g0260700 CB659887 - PUR-alpha/beta/gamma, DNA/RNA-binding familyprotein 3e-12 At2g32080 PUR ALPHA-1 C.G. S.X.
0.16 7e-6 52 Triticum aestivum Ta.4232.1.S1_s_at CK169440 - - 5e-5 At2g32080 PUR ALPHA-1 C.G. S.X.
0.10 5e-7 54 Vitis vinifera 1618360_at CF204032.1 - - 5e-13 At2g32080 PUR ALPHA-1 C.G. S.X.
0.07 7e-4 44 Zea mays Zm.2102.1.A1_at AW267527 hypothetical protein LOC100274069 - 3e-3 At2g32080 PUR ALPHA-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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