CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.13452.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) S.X. H.G.
0.59 84.9 PtpAffx.151954.1.S1_a_at CV259016 hypothetical protein - 6e-26 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.55 82.2 PtpAffx.32904.1.A1_at CV258986 hypothetical protein - 6e-6 At4g25300 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
0.44 71.9 PtpAffx.151954.3.S1_at CX186472 hypothetical protein - 7e-33 At3g58180 PBS lyase HEAT-like repeat-containing protein S.X. H.G.
0.44 71.9 Ptp.6553.2.A1_at CK093504 hypothetical protein - 6e-1 At5g29000 myb family transcription factor S.X. H.G.
0.44 71.9 Ptp.3295.1.S1_at BU813448 hypothetical protein - 1e-3 At3g05545 transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.9 99.7 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
13.5 99.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.8 99.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.0 98.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.5 98.3 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.3 81.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.9 74.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 PtpAffx.60967.1.S1_at DN491651 hypothetical protein - 4e-1 At3g11530 vacuolar protein sorting 55 family protein / VPS55 family protein C.G. S.X.
0.02 2e-1 38 PtpAffx.210957.1.S1_at pmrna21526 hypothetical protein - 6e-29 At3g05040 HST (HASTY) C.G. S.X.
0.02 2e-1 38 PtpAffx.208005.1.S1_at pmrna15887 hypothetical protein - 1e-20 At1g25500 choline transporter-related C.G. S.X.
0.02 7e-1 36 PtpAffx.56897.1.A1_at CV246950 hypothetical protein - 1e+0 At5g14370 - C.G. S.X.
0.02 7e-1 36 PtpAffx.39326.1.S1_at CK096927 - - 3e-1 At5g07250 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) C.G. S.X.
0.01 7e-1 36 PtpAffx.219894.1.S1_at pmrna36051 - - 2e+1 At5g22280 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.213228.1.S1_s_at pmrna25874 hypothetical protein - 1e-1 At5g42325 transcription elongation factor-related C.G. S.X.
0.02 7e-1 36 PtpAffx.211623.1.S1_at pmrna22779 hypothetical protein - 1e-22 At3g61850 DAG1 (dof affecting germination 1) C.G. S.X.
0.01 7e-1 36 PtpAffx.208680.1.S1_at pmrna17217 hypothetical protein - 1e-52 At1g70570 anthranilate phosphoribosyltransferase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-6 54 Arabidopsis thaliana At5g63910 836512 FCLY (FARNESYLCYSTEINE LYASE) encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate. - - - C.G. S.X.
0.34 2e-32 141 Glycine max Gma.4668.1.S1_at AW348596 - - 5e-10 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEa0011M12r2_at HVSMEa0011M12r2 - - 4e+0 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.14528.3.S1_x_at - - - 0 C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.16462.1.S1_at CA606724 - - 2e+0 At4g11570 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.11 2e-25 115 Vitis vinifera 1609952_at CB980120 hypothetical protein LOC100268071 - 3e-10 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9996.1.A1_at BM350937 hypothetical protein LOC100273898 - 3e-1 At4g02910 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage