CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.13366.1.S1_at

Gene name 10-formyltetrahydrofolate synthetase /// 10-formyltetrahydrofolate synthetase

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 95.1 PtpAffx.13366.1.S1_at AJ768061 10-formyltetrahydrofolate synthetase /// 10-formyltetrahydrofolate synthetase - 4e-41 At1g50480 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) S.X. H.G.
0.52 79.4 PtpAffx.108855.1.S1_s_at AJ769038 histone deacetylase - 6e-9 At5g61060 HDA05 (HISTONE DEACETYLASE 5) S.X. H.G.
0.52 79.4 PtpAffx.158776.1.S1_s_at CX168578 hypothetical protein - 1e+0 At5g20060 phospholipase/carboxylesterase family protein S.X. H.G.
0.43 69.7 PtpAffx.36701.1.S1_s_at CF936040 hypothetical protein - 1e-34 At2g21270 ubiquitin fusion degradation UFD1 family protein S.X. H.G.
0.39 64.6 PtpAffx.60130.1.S1_at DN495929 hypothetical protein - 1e-10 At3g13224 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.38 63.7 PtpAffx.201300.1.S1_s_at pmrna2582 hypothetical protein - 1e-34 At3g13224 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.38 63.7 PtpAffx.135342.1.S1_at CN550200 hypothetical protein - 2e-40 At2g03270 DNA-binding protein, putative S.X. H.G.
0.36 61.6 PtpAffx.161372.1.S1_s_at CN517424 global transcription factor group - 6e+0 At4g21040 Dof-type zinc finger domain-containing protein S.X. H.G.
0.33 57.5 Ptp.4562.1.S1_s_at CV261348 hypothetical protein - 1e-20 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) S.X. H.G.
0.32 55.2 PtpAffx.10892.2.S1_a_at CN520703 hypothetical protein - 3e-48 At3g21640 TWD1 (TWISTED DWARF 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 94.7 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 36 PtpAffx.212149.1.S1_at pmrna23826 hypothetical protein - 5e-47 At1g08600 ATRX C.G. S.X.
0.01 5e-1 36 PtpAffx.203337.1.S1_s_at pmrna6642 nbs-lrr resistance protein - 3e-7 At5g43470 RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) C.G. S.X.
0.01 5e-1 36 PtpAffx.203335.1.S1_s_at pmrna6640 nbs-lrr resistance protein - 4e-7 At5g43470 RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) C.G. S.X.
0.02 5e-1 36 PtpAffx.203340.1.S1_s_at pmrna6645 nbs-lrr resistance protein - 1e-7 At5g43470 RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) C.G. S.X.
0.01 5e-1 36 PtpAffx.203335.1.S1_at pmrna6640 nbs-lrr resistance protein - 4e-7 At5g43470 RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) C.G. S.X.
0.01 2e+0 34 PtpAffx.208849.1.S1_at pmrna17547 histidine kinase cytokinin receptor - 5e-65 At2g01830 WOL (WOODEN LEG) C.G. S.X.
0.01 2e+0 34 PtpAffx.208091.1.S1_at pmrna16070 histidine kinase cytokinin receptor - 5e-65 At2g01830 WOL (WOODEN LEG) C.G. S.X.
0.01 2e+0 34 PtpAffx.201298.1.S1_at pmrna2577 hypothetical protein - 2e-1 At2g40720 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 2e+0 34 PtpAffx.11482.2.A1_a_at CV231655 hypothetical protein - 4e-1 At2g26150 ATHSFA2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-41 169 Arabidopsis thaliana At1g50480 841470 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) 10-formyltetrahydrofolate synthetase (THFS) mRNA, complete - - - C.G. S.X.
0.53 5e-121 434 Glycine max GmaAffx.54410.1.S1_at BI095119 - - 1e-82 At1g50480 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) C.G. S.X.
0.02 3e+0 32 Hordeum vulgare rbaal1n19_at rbaal1n19 - - 2e-8 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.16 7e-44 178 Oryza sativa Os09g0446800 AK065164.1 - Formate-tetrahydrofolate ligase, FTHFS familyprotein 1e-62 At1g50480 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) C.G. S.X.
0.08 7e-12 71 Triticum aestivum Ta.14577.1.S1_at CA640385 - - 8e-66 At1g50480 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612693_at CB349110 - - 4e+0 At5g59040 COPT3 C.G. S.X.
0.22 2e-31 135 Zea mays Zm.13856.1.S1_at AF439727.1 formate tetrahyrofolate ligase - 9e-58 At1g50480 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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