Gene omics information

Query gene ID	PtpAffx.133398.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	91.7	PtpAffx.133398.1.A1_at	CV278665	hypothetical protein	-	8e-27	At5g17170	ENH1 (enhancer of sos3-1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.35988.4.A1_a_at	BU883315	-	-	1e-7	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.138084.1.S1_s_at	CN519591	-	-	2e-28	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.35988.1.A1_at	CV261103	-	-	8e-9	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.107075.1.S1_at	BI072717	hypothetical protein	-	4e-50	At3g19170	ATPREP1 (PRESEQUENCE PROTEASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.41989.1.S1_s_at	DN490162	hypothetical protein	-	3e-4	At4g21210	ATRP1 (PPDK REGULATORY PROTEIN)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.83319.1.S1_s_at	CN523183	-	-	1e-81	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.5008.1.S1_at	CK104934	-	-	4e-26	At5g54290	cytochrome c biogenesis protein family	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.212770.1.S1_at	pmrna24990	hypothetical protein	-	7e-9	At1g27510	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.1	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
5.4	97.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.0	96.6	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.9	96.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.1	95.5	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	6e-161	567	Ptp.7433.1.S1_at	CV267931	-	-	1e-48	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.61	6e-161	567	Ptp.7433.1.S1_s_at	CV267931	hypothetical protein	-	1e-48	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.204937.1.S1_at	pmrna9773	hypothetical protein	-	9e-1	At5g24313	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.6610.1.A2_a_at	CV263107	hypothetical protein	-	3e-39	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.6610.1.A1_a_at	CV234438	hypothetical protein	-	3e-39	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.6610.1.A1_x_at	CV234438	hypothetical protein	-	3e-39	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.6610.1.A1_at	CV234438	-	-	3e-39	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.212721.1.S1_at	pmrna24880	hypothetical protein	-	7e-5	At3g17920	protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.6316.1.A1_at	CV282366	hypothetical protein	-	4e-5	At5g27830	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	8e-27	121	Arabidopsis thaliana	At5g17170	831581	ENH1 (enhancer of sos3-1)	F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	8e-40	165	Glycine max	Gma.13129.1.S1_at	CD404336	-	-	2e-62	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.21	1e-14	79	Hordeum vulgare	Contig4014_at	Contig4014	-	-	5e-10	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.20	6e-26	119	Oryza sativa	Os08g0162600	AK060121.1	-	Rubredoxin-type Fe(Cys)4 protein family protein	6e-22	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	1e-19	97	Triticum aestivum	Ta.5590.2.S1_at	CK214552	-	-	7e-7	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.25	3e-48	190	Vitis vinifera	1610210_at	CA812095	hypothetical protein LOC100263114	-	8e-28	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select
0.11	5e-14	77	Zea mays	Zm.3400.1.S1_at	CN845120	-	-	2e-9	At5g17170	ENH1 (enhancer of sos3-1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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