Gene omics information

Query gene ID	PtpAffx.133018.1.S1_s_at
Gene name	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	92.7	PtpAffx.133018.1.S1_s_at	CX178502	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein	-	4e-22	At5g41040	transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.21642.3.S1_at	AI161611	-	-	8e-2	At5g18500	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.211556.1.S1_at	pmrna22644	hypothetical protein	-	1e-1	At4g00340	RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.157082.1.S1_s_at	BU822288	hypothetical protein	-	4e-6	At1g60530	dynamin family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.53712.1.S1_at	BU822866	hypothetical protein	-	4e-5	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.164008.1.S1_at	BU821318	GRAS family transcription factor	-	3e-11	At4g37650	SHR (SHORT ROOT)	S.X.	H.G.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.44429.1.S1_at	CV232406	hypothetical protein	-	7e-39	At2g34680	AIR9	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.21642.2.S1_x_at	AJ490334.1	-	-	1e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.214327.1.S1_s_at	pmrna27860	hypothetical protein	-	3e+0	At4g12617	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.216874.1.S1_s_at	pmrna31919	hypothetical protein	-	6e-23	At1g59740	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
10.1	99.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.6	98.6	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
7.8	98.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.7	97.3	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	1098	Ptp.5997.1.S1_at	CV281976	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein	-	3e-28	At5g41040	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	1e-4	48	PtpAffx.114321.1.A1_at	CV262638	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein /// hypothetical protein	-	5e-10	At5g41040	transferase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.203118.1.S1_at	pmrna6179	hypothetical protein	-	4e-1	At4g27890	nuclear movement family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.7814.1.S1_at	BP934789	hypothetical protein	-	6e-38	At5g47180	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.207369.1.S1_at	pmrna14620	hypothetical protein	-	2e-3	At4g36520	heat shock protein binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.18595.1.S1_at	BU868736	-	-	2e-19	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.18595.1.S1_a_at	BU868736	-	-	2e-19	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.153090.1.S1_at	CV270659	histone acetyltransferase complex component	-	5e+0	At5g15310	ATMYB16 (MYB DOMAIN PROTEIN 16)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.3751.1.S1_at	DN488359	-	-	2e+0	At5g22270	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-22	105	Arabidopsis thaliana	At5g41040	834106	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	8e-18	91	Glycine max	GmaAffx.17856.1.A1_at	BG046286	-	-	3e-10	At5g41040	transferase family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig24241_at	Contig24241	-	-	9e+0	At5g54215	-	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os02g0175800	AK058292.1	-	Conserved hypothetical protein	2e+0	At5g28610	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	Ta.17889.1.S1_at	CA625339	-	-	1e+0	At1g61065	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1614420_at	CB345224	-	-	4e-80	Atcg00020	-	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.3075.1.A1_at	CO520772	thymidylate kinase	-	2e+1	At3g61829	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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