CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.132883.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.132883.1.S1_at BI072375 hypothetical protein - 2e-1 At4g10430 - S.X. H.G.
0.40 67.0 PtpAffx.203551.1.S1_at pmrna7052 chromatin remodeling complex subunit - 4e-26 At3g54460 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein S.X. H.G.
0.40 67.0 PtpAffx.219775.1.S1_x_at pmrna35842 hypothetical protein - 5e-1 At5g03380 heavy-metal-associated domain-containing protein S.X. H.G.
0.33 57.5 PtpAffx.207242.1.S1_at pmrna14353 hypothetical protein - 2e-20 At4g35470 leucine-rich repeat family protein S.X. H.G.
0.32 55.2 PtpAffx.28701.2.S1_s_at BU867887 hypothetical protein - 1e-13 At5g01520 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.23 40.5 PtpAffx.5862.1.A1_at CV231890 chromatin remodeling complex subunit - 1e+0 At2g31380 STH S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.2 99.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.8 99.5 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
9.1 98.7 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.8 98.7 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.1 98.1 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.2 79.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 9e-143 506 Ptp.494.1.S1_s_at CV271388 hypothetical protein - 2e-4 At1g18300 atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4) C.G. S.X.
0.07 1e-12 73 PtpAffx.42782.1.S1_at CV242867 hypothetical protein - 3e-3 At1g18300 atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4) C.G. S.X.
0.10 2e-8 59 Ptp.3930.1.S1_at BU870954 hypothetical protein - 3e-1 At3g12600 atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16) C.G. S.X.
0.10 2e-8 59 Ptp.3930.1.S1_s_at BU870954 hypothetical protein - 3e-1 At3g12600 atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16) C.G. S.X.
0.07 2e-5 50 PtpAffx.153098.1.A1_at CV267344 hypothetical protein - 5e-7 At1g18300 atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4) C.G. S.X.
0.03 1e-3 44 PtpAffx.1289.1.S1_at CV233213 hypothetical protein - 2e-3 At5g58110 ATPase activator/ chaperone binding C.G. S.X.
0.01 2e-2 40 PtpAffx.219762.1.S1_at pmrna35817 EIN2 -like protein, nramp transporter - 2e-13 At5g03280 EIN2 (ETHYLENE INSENSITIVE 2) C.G. S.X.
0.03 2e-2 40 PtpAffx.105178.1.S1_at CV235583 - - 2e-12 At3g01790 ribosomal protein L13 family protein C.G. S.X.
0.01 6e-2 38 PtpAffx.214267.1.S1_at pmrna27767 glutamate-gated kainate-type ion channel receptor subunit GluR5 - 5e-3 At5g11180 ATGLR2.6 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At4g10430 826635 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO - - - C.G. S.X.
0.07 3e-1 36 Glycine max Gma.8925.1.S1_at BU763359 - - 2e+0 At5g56800 - C.G. S.X.
0.05 1e+0 32 Hordeum vulgare EBem09_SQ002_L08_x_at EBem09_SQ002_L08 - - 1e-1 At2g27790 nucleic acid binding / nucleotide binding C.G. S.X.
0.03 4e-1 36 Oryza sativa Os06g0203400 9634.m00993 - - 1e-1 At5g19090 heavy-metal-associated domain-containing protein C.G. S.X.
0.05 7e-1 34 Triticum aestivum Ta.13782.3.S1_x_at CA605938 - - 4e+0 At2g21010 C2 domain-containing protein C.G. S.X.
0.05 1e-2 38 Vitis vinifera 1619645_at CF202342.1 - - 2e-1 At2g35850 unknown protein C.G. S.X.
0.04 2e-2 38 Zea mays Zm.17973.1.A1_at AI812220 - - 4e+0 At3g24540 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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