Gene omics information

Query gene ID PtpAffx.13217.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5078.6PtpAffx.13217.1.S1_atCK320792--2e-6At5g53370PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)S.X.H.G.
0.4471.9Ptp.1958.1.S1_s_atCK087977hypothetical protein-7e-43At2g03350unknown proteinS.X.H.G.
0.3153.7PtpAffx.11906.1.A1_atCV247477--2e+0At5g56100glycine-rich protein / oleosinS.X.H.G.
0.2034.6PtpAffx.204170.1.S1_s_atpmrna8216hypothetical protein-2e-9At1g13680phospholipase C/ phosphoric diester hydrolaseS.X.H.G.
0.1219.6PtpAffx.24419.1.A1_atCV260423hypothetical protein-2e-5At3g56130biotin/lipoyl attachment domain-containing proteinS.X.H.G.
0.1118.1PtpAffx.215970.1.S1_atpmrna30464hypothetical protein-8e-20At4g35420dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.899.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
9.298.8GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
8.398.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
6.998.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.997.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
4.996.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.495.9GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
4.295.6GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.794.7GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.992.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.7901441Ptp.2234.1.S1_s_atCV257661hypothetical protein-5e-20At3g49220pectinesterase family proteinC.G.S.X.
0.550852Ptp.5754.1.S1_s_atCV231440hypothetical protein-1e-18At3g49220pectinesterase family proteinC.G.S.X.
0.131e-1791PtpAffx.117937.1.S1_atDN485091hypothetical protein-2e-3At3g10720pectinesterase, putativeC.G.S.X.
0.062e-1377PtpAffx.207505.1.S1_atpmrna14908hypothetical protein-4e-18At5g04970pectinesterase, putativeC.G.S.X.
0.102e-1377Ptp.7635.1.S1_atDN484289hypothetical protein-1e-14At1g02810pectinesterase family proteinC.G.S.X.
0.065e-1169PtpAffx.208878.1.S1_atpmrna17599hypothetical protein-3e-3At5g20860pectinesterase family proteinC.G.S.X.
0.051e-861PtpAffx.209486.1.S1_atpmrna18810hypothetical protein-2e-14At5g04970pectinesterase, putativeC.G.S.X.
0.051e-861PtpAffx.209486.1.S1_s_atpmrna18810hypothetical protein-2e-14At5g04970pectinesterase, putativeC.G.S.X.
0.077e-756PtpAffx.94750.1.A1_atCV273451hypothetical protein-9e-2At5g51490pectinesterase family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-654Arabidopsis thalianaAt5g53370835418PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMO---C.G.S.X.
0.245e-1789Glycine maxGma.7198.1.S1_atBI968104--8e-13At5g53370PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)C.G.S.X.
0.033e-446Hordeum vulgareContig13318_atContig13318--1e-2At3g59010pectinesterase family proteinC.G.S.X.
0.042e-138Oryza sativaOs01g0312500AK105998.1-Pectin methylesterase isoform alpha (EC 3.1.1.11)(Fragment)2e-2At3g14310ATPME3C.G.S.X.
0.031e-448Triticum aestivumTaAffx.99157.1.S1_atCK211986--1e-2At4g00190pectinesterase family proteinC.G.S.X.
0.103e-961Vitis vinifera1615574_atCB977067hypothetical protein LOC100245304-7e-9At2g45220pectinesterase family proteinC.G.S.X.
0.031e+130Zea maysZmAffx.838.1.A1_atAI770588--3e+0At1g61700DNA-directed RNA polymerase II, putative (RPB10)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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