Gene omics information

Query gene ID	PtpAffx.131455.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.4212.1.S1_a_at	DN502730	-	-	9e-2	At3g10820	DNA binding / protein binding / transcription regulator	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.825.2.S1_at	BU862707	-	-	4e-26	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.63140.2.S1_s_at	DN500684	hypothetical protein	-	7e-11	At1g43130	LCV2 (LIKE COV 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.146077.1.S1_at	CX177480	hypothetical protein	-	4e-1	At2g16890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4320.1.S1_at	CN523651	hypothetical protein	-	3e-8	At4g27000	ATRBP45C	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	0	1116	PtpAffx.203185.1.S1_s_at	pmrna6316	hypothetical protein	-	2e-51	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	0	1116	PtpAffx.203185.1.S1_at	pmrna6316	hypothetical protein	-	2e-51	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.25	6e-111	400	PtpAffx.20458.1.S1_at	CV256549	hypothetical protein	-	2e-41	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	6e-37	155	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-10	65	Ptp.2481.1.A1_s_at	CV247386	hypothetical protein	-	2e-28	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	7e-6	52	PtpAffx.111628.1.S1_at	BU823876	-	-	8e+0	At5g43050	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.222995.1.S1_x_at	pmrna40761	hypothetical protein	-	2e-31	At3g06850	BCE2	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.222995.1.S1_at	pmrna40761	hypothetical protein	-	2e-31	At3g06850	BCE2	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	4e-1	36	PtpAffx.215483.1.S1_at	pmrna29702	hypothetical protein	-	1e+0	At1g18590	SOT17 (SULFOTRANSFERASE 17)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	7e-39	161	Arabidopsis thaliana	At4g02570	825648	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.57	1e-47	190	Glycine max	GmaAffx.90456.1.S1_s_at	CF806181	-	-	3e-60	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select
0.11	5e-1	34	Hordeum vulgare	Contig3125_at	Contig3125	-	-	2e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select
0.13	7e-16	85	Oryza sativa	Os05g0149600	AK073947.1	-	Cullin 1	8e-30	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e+0	34	Triticum aestivum	TaAffx.83933.1.S1_at	CA647915	-	-	8e-1	At3g58410	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1619864_at	CD721451	hypothetical protein LOC100261391	-	4e-10	At3g09970	calcineurin-like phosphoesterase family protein	C.G.	S.X.	Please select
0.07	5e-1	34	Zea mays	Zm.2548.1.A1_at	AY106256.1	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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