CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.129212.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 PtpAffx.129212.1.S1_at BP929522 hypothetical protein - 1e+0 At5g11412 nucleic acid binding / nucleotide binding S.X. H.G.
0.55 82.2 PtpAffx.145996.1.S1_at AI162583 hypothetical protein - 3e-1 At1g66820 glycine-rich protein S.X. H.G.
0.55 82.2 PtpAffx.136990.1.S1_at BU885285 - - 1e-19 At1g72880 acid phosphatase survival protein SurE, putative S.X. H.G.
0.44 71.9 PtpAffx.39908.3.S1_a_at CX176310 hypothetical protein - 1e-71 At1g10430 PP2A-2 S.X. H.G.
0.44 71.9 Ptp.7424.1.S1_at BU861469 hypothetical protein - 7e-52 At1g12840 DET3 (DE-ETIOLATED 3) S.X. H.G.
0.27 47.1 PtpAffx.78955.1.S1_at BU876794 hypothetical protein - 6e-55 At4g24550 clathrin adaptor complexes medium subunit family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 97.2 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.4 95.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.6 94.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 PtpAffx.200327.1.S1_at pmrna650 hypothetical protein - 1e-1 At5g12300 C2 domain-containing protein C.G. S.X.
0.02 6e+0 32 PtpAffx.224794.1.S1_at pmrna43644 hypothetical protein - 1e-1 At1g26420 FAD-binding domain-containing protein C.G. S.X.
0.01 6e+0 32 PtpAffx.220020.1.S1_at pmrna36266 hypothetical protein - 6e-71 At5g47020 glycine-rich protein C.G. S.X.
0.01 6e+0 32 PtpAffx.214365.1.S1_at pmrna27949 hypothetical protein - 6e-73 At2g19880 ceramide glucosyltransferase, putative C.G. S.X.
0.01 6e+0 32 PtpAffx.213114.1.S1_at pmrna25663 hypothetical protein - 2e-1 At1g12150 - C.G. S.X.
0.01 6e+0 32 PtpAffx.208476.1.S1_at pmrna16839 hypothetical protein - 8e-1 At2g20515 unknown protein C.G. S.X.
0.03 6e+0 32 PtpAffx.145331.1.A1_at BP932377 - - 3e-1 At3g20865 AGP40 (arabinogalactan-protein 40) C.G. S.X.
0.03 6e+0 32 PtpAffx.145331.1.A1_s_at BP932377 - - 3e-1 At3g20865 AGP40 (arabinogalactan-protein 40) C.G. S.X.
0.03 6e+0 32 PtpAffx.128165.1.A1_a_at CV241610 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g11412 6240527 nucleic acid binding / nucleotide binding F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system;MPFOB - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.73377.1.A1_at BI969520 - - 2e-1 At4g07380 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HV_CEa0009C07r2_at HV_CEa0009C07r2 - - 3e-1 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.03 1e-1 38 Oryza sativa Os05g0379300 AK109293.1 - Hypothetical protein 4e-2 At2g42390 protein kinase C substrate, heavy chain-related C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.109155.1.S1_at CA679363 - - 6e-1 At1g63055 unknown protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1620578_at CF372517 - - 3e-13 At1g01940 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.4950.1.A1_at AW067244 receptor-like protein kinase - 1e+1 At3g46390 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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