Gene omics information

Query gene ID	PtpAffx.128825.2.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	93.6	PtpAffx.128825.2.S1_a_at	CK096703	hypothetical protein	-	4e-7	At5g67270	ATEB1C (microtubule end binding protein 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.2265.10.A1_a_at	CV246443	hypothetical protein	-	2e-4	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.81	96.1	PtpAffx.86796.1.A1_at	DN490220	hypothetical protein	-	1e-14	At2g26180	IQD6 (IQ-domain 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.6857.2.S1_s_at	CA923790	hypothetical protein	-	1e-1	At4g35620	CYCB2	S.X.	H.G.	Please selecteFP Browser (expression)
0.76	94.3	PtpAffx.210026.1.S1_at	pmrna19760	hypothetical protein	-	1e-4	At4g38070	bHLH family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.69	91.5	Ptp.4412.2.S1_s_at	CV237391	hypothetical protein	-	1e-57	At2g25880	AtAUR2 (AtAurora2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.759.1.S1_at	CV259673	tubulin alpha-7 chain	-	1e-82	At4g14960	TUA6	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.201265.1.S1_at	pmrna2509	hypothetical protein	-	5e-7	At3g20150	kinesin motor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.6857.1.S1_s_at	BU833205	hypothetical protein	-	6e-9	At1g20590	cyclin, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.200879.1.S1_at	pmrna1723	hypothetical protein	-	2e-6	At2g26760	CYCB1	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-4	46	PtpAffx.88847.1.A1_s_at	CV249912	-	-	2e+0	At4g12190	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-2	40	Ptp.5801.2.S1_a_at	BU836809	hypothetical protein	-	2e+0	At1g24440	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.208420.1.S1_at	pmrna16731	hypothetical protein	-	3e+0	At3g03240	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.206237.1.S1_at	pmrna12376	hypothetical protein	-	2e-33	At2g37670	WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.80204.1.S1_at	DN487093	hypothetical protein	-	2e+0	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.216574.1.S1_at	pmrna31438	hypothetical protein	-	2e+0	At1g56220	dormancy/auxin associated family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.209959.1.S1_at	pmrna19643	hypothetical protein	-	1e-5	At3g23560	ALF5 (ABERRANT LATERAL ROOT FORMATION 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.209959.1.S1_a_at	pmrna19643	hypothetical protein	-	1e-5	At3g23560	ALF5 (ABERRANT LATERAL ROOT FORMATION 5)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.206893.1.S1_at	pmrna13684	hypothetical protein	-	6e+0	At4g37850	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-7	56	Arabidopsis thaliana	At5g67270	836862	ATEB1C (microtubule end binding protein 1)	encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	5e-17	89	Glycine max	Gma.5303.1.A1_at	CD398988	-	-	2e+0	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.07	3e-3	42	Hordeum vulgare	Contig11881_at	Contig11881	-	-	5e-17	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please select
0.07	1e-5	52	Oryza sativa	Os10g0498900	AK108732.1	-	EB1 domain containing protein	5e-17	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Triticum aestivum	Ta.9651.1.A1_at	BJ213208	-	-	5e-14	At3g47690	ATEB1A	C.G.	S.X.	Please select
0.18	5e-7	54	Vitis vinifera	1609851_at	CF512845	hypothetical protein LOC100262748	-	9e-54	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please select
0.09	1e-11	69	Zea mays	Zm.6324.1.A1_at	AI586906	microtubule-associated protein RP/EB family member 3	-	1e-14	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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