CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.12848.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.12848.1.S1_at DN484571 hypothetical protein - 3e-11 At2g37410 ATTIM17-2 S.X. H.G.
0.60 86.0 Ptp.4629.1.S1_s_at CV269449 hypothetical protein - 9e-15 At1g12360 KEU (keule) S.X. H.G.
0.50 78.6 Ptp.4333.1.S1_s_at BU815840 hypothetical protein - 1e-16 At2g14835 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.24 41.8 Ptp.6163.2.S1_s_at CF234204 hypothetical protein - 9e-24 At3g53710 AGD6 S.X. H.G.
0.23 40.5 PtpAffx.157395.1.S1_s_at CK102655 hypothetical protein - 2e-12 At5g13860 ELC-Like (ELCH-like) S.X. H.G.
0.23 40.5 PtpAffx.39908.3.S1_a_at CX176310 hypothetical protein - 1e-71 At1g10430 PP2A-2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.1 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 1e-149 529 Ptp.6682.1.S1_at CK087876 hypothetical protein - 1e-57 At1g27400 60S ribosomal protein L17 (RPL17A) C.G. S.X.
0.46 7e-59 228 PtpAffx.28432.1.S1_at CV241400 - - 6e-7 At2g37410 ATTIM17-2 C.G. S.X.
0.44 2e-56 220 Ptp.2215.1.S1_s_at CV282451 - - 5e-7 At2g37410 ATTIM17-2 C.G. S.X.
0.24 4e-42 173 PtpAffx.208610.1.S1_at pmrna17096 hypothetical protein - 6e+0 At5g42850 - C.G. S.X.
0.15 7e-25 115 PtpAffx.23746.1.A1_at CV231017 hypothetical protein - 7e+0 At5g26731 unknown protein C.G. S.X.
0.08 6e-10 65 Ptp.2215.2.A1_at CK089837 - - 7e-1 At5g54660 heat shock protein-related C.G. S.X.
0.07 1e-7 57 PtpAffx.44539.1.A1_at CV228422 - - 1e+0 At5g50175 unknown protein C.G. S.X.
0.04 9e-3 42 PtpAffx.214447.1.S1_at pmrna28092 hypothetical protein - 2e+0 At2g37940 - C.G. S.X.
0.03 4e-2 40 PtpAffx.249.448.S1_s_at BU824500 - - 1e-6 At1g54410 dehydrin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 3e-11 69 Arabidopsis thaliana At2g37410 818317 ATTIM17-2 Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway. - - - C.G. S.X.
0.17 7e-22 105 Glycine max GmaAffx.9037.1.S1_at BE822770 - - 5e-1 At2g37410 ATTIM17-2 C.G. S.X.
0.13 7e-29 127 Hordeum vulgare Contig10300_at Contig10300 - - 4e-2 At4g21740 unknown protein C.G. S.X.
0.17 2e-26 121 Oryza sativa OsAffx.5591.1.S1_at - - - 0 C.G. S.X.
0.12 1e-28 127 Triticum aestivum Ta.6865.1.S1_at CD902863 - - 4e-2 At4g21740 unknown protein C.G. S.X.
0.13 2e-25 115 Vitis vinifera 1621567_at BQ793310 hypothetical protein LOC100259466 - 1e-4 At2g37410 ATTIM17-2 C.G. S.X.
0.12 3e-12 71 Zea mays Zm.13937.1.S1_at AY108141.1 mitochondrial import inner membrane translocase subunit Tim17 - 6e-1 At2g37410 ATTIM17-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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