CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.128165.1.A1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.128165.1.A1_a_at CV241610 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) S.X. H.G.
0.60 86.0 PtpAffx.27667.1.S1_at DN491641 hypothetical protein - 2e+0 At1g07880 ATMPK13 S.X. H.G.
0.57 84.2 PtpAffx.8523.2.S1_a_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.254.1.S1_s_at CV268035 hypothetical protein - 1e-20 At2g47115 unknown protein S.X. H.G.
0.16 26.9 PtpAffx.7251.1.S1_at BU812613 hypothetical protein - 4e-11 At5g65260 polyadenylate-binding protein family protein / PABP family protein S.X. H.G.
0.09 14.6 PtpAffx.108741.1.A1_at CV266015 hypothetical protein - 4e-1 At5g62490 ATHVA22B S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 98.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
8.3 98.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-19 97 PtpAffx.216919.1.S1_at pmrna31993 hypothetical protein - 3e-1 At1g23050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.23 9e-15 81 PtpAffx.217321.1.S1_at pmrna32535 hypothetical protein - 8e-2 At1g21600 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) C.G. S.X.
0.12 2e-3 44 PtpAffx.222231.1.S1_at pmrna39507 hypothetical protein - 3e+0 At5g59850 40S ribosomal protein S15A (RPS15aF) C.G. S.X.
0.01 1e-1 38 PtpAffx.213967.1.S1_at pmrna27219 hypothetical protein - 4e-1 At2g34530 unknown protein C.G. S.X.
0.01 1e-1 38 PtpAffx.209272.1.S1_s_at pmrna18319 hypothetical protein - 0 At3g08530 clathrin heavy chain, putative C.G. S.X.
0.01 5e-1 36 PtpAffx.65.1.S1_at CV256514 hypothetical protein - 1e-42 At5g47520 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) C.G. S.X.
0.01 5e-1 36 PtpAffx.200278.1.S1_at pmrna553 hypothetical protein - 2e-14 At3g51980 binding C.G. S.X.
0.02 5e-1 36 PtpAffx.141142.1.A1_at CV254374 hypothetical protein - 2e+0 At2g16520 - C.G. S.X.
0.02 2e+0 34 PtpAffx.83353.1.A1_at CV228541 hypothetical protein - 9e-8 At3g62080 SNF7 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g76930 844028 ATEXT4 (EXTENSIN 4) Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness. - - - C.G. S.X.
0.04 2e+0 34 Glycine max Gma.6667.1.A1_at AI938921 - - 3e+0 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig9996_at Contig9996 - - 1e+0 At3g18460 unknown protein C.G. S.X.
0.04 1e+1 32 Oryza sativa OsAffx.28593.1.S1_at - - - 0 C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.79067.1.S1_at CA723168 - - 8e-1 At2g37970 SOUL-1 C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1614313_at CB349658 - - 4e+0 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.2517.3.A1_x_at AF371272.1 zein polypeptidesL2b - 9e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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