CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.127785.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.127785.1.S1_at CV244219 hypothetical protein - 6e+0 At4g35070 - S.X. H.G.
0.89 97.8 Ptp.3188.1.S1_s_at CV272339 hypothetical protein - 3e-2 At5g22360 ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) S.X. H.G.
0.80 96.0 PtpAffx.2274.1.S1_at CV262526 hypothetical protein - 6e+0 At5g09530 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.80 96.0 PtpAffx.101338.1.A1_at CV268770 hypothetical protein - 1e-28 At3g11430 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5) S.X. H.G.
0.75 94.1 PtpAffx.59172.1.S1_s_at BU885589 hypothetical protein - 1e+0 At5g46150 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
0.63 88.1 PtpAffx.217339.1.S1_s_at pmrna32557 hypothetical protein - 1e-1 At3g50400 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.59 84.9 PtpAffx.207305.1.S1_at pmrna14487 hypothetical protein - 7e-31 At2g23540 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.57 84.2 PtpAffx.5070.1.A1_at CV273039 - - 6e-4 At2g18360 hydrolase, alpha/beta fold family protein S.X. H.G.
0.46 73.7 PtpAffx.30807.1.A1_at CV260510 hypothetical protein - 3e-1 At2g33855 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 98.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.9 98.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.9 97.4 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.2 96.8 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.6 96.2 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-16 87 PtpAffx.225902.1.S1_at pmrna45550 hypothetical protein - 1e+0 At4g23340 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.09 3e-15 83 PtpAffx.223348.1.S1_at pmrna41296 hypothetical protein - 1e+0 At5g16010 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein C.G. S.X.
0.09 2e-12 73 PtpAffx.24443.1.A1_at CV259460 hypothetical protein - 6e+0 At5g51010 rubredoxin family protein C.G. S.X.
0.19 4e-8 59 PtpAffx.223207.1.S1_s_at pmrna41084 hypothetical protein - 3e-1 At4g30640 F-box family protein (FBL19) C.G. S.X.
0.08 1e-7 57 PtpAffx.213796.1.S1_at pmrna26929 hypothetical protein - 2e-1 At4g30640 F-box family protein (FBL19) C.G. S.X.
0.13 1e-7 57 PtpAffx.212375.1.S1_at pmrna24252 hypothetical protein - 4e+0 At5g35890 beta-galactosidase C.G. S.X.
0.19 2e-6 54 PtpAffx.213791.1.S1_x_at pmrna26922 hypothetical protein - 3e+0 At4g25670 unknown protein C.G. S.X.
0.19 2e-6 54 PtpAffx.213791.1.S1_at pmrna26922 hypothetical protein - 3e+0 At4g25670 unknown protein C.G. S.X.
0.09 2e-6 54 PtpAffx.160244.1.A1_at CV241278 hypothetical protein - 1e+0 At3g18291 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At4g35070 829659 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPVBFA - - - C.G. S.X.
0.03 5e-1 36 Glycine max GmaAffx.65661.1.S1_at BI700358 - - 1e+1 At5g08505 - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV_CEb0003O01r2_x_at HV_CEb0003O01r2 - - 3e-1 At5g40382 cytochrome-c oxidase C.G. S.X.
0.03 5e-2 40 Oryza sativa Os08g0496500 AK108510.1 - Transcription factor CBF/NF-Y/archaeal histonedomain containing protein 5e-13 At1g08970 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.84091.1.S1_at CA645065 - - 3e-2 At4g19850 ATPP2-A2 C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1608203_at CF511734 - - 7e-2 At2g38185 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+1 30 Zea mays Zm.2781.1.S1_at CF007960 - - 5e+0 At4g35480 RHA3B C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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